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    Tnp2 transition protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 21959, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tnp2provided by MGI
    Official Full Name
    transition protein 2provided by MGI
    Primary source
    MGI:MGI:98785
    See related
    Ensembl:ENSMUSG00000043050 AllianceGenome:MGI:98785
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TP2; Tp-2
    Summary
    Predicted to enable zinc ion binding activity. Involved in positive regulation of protein processing and sperm DNA condensation. Acts upstream of or within several processes, including binding activity of sperm to zona pellucida; flagellated sperm motility; and penetration of zona pellucida. Located in male germ cell nucleus. Part of nucleosome. Is expressed in spermatid and testis. Orthologous to human TNP2 (transition protein 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 8790.1) See more
    Orthologs
    NEW
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    Genomic context

    See Tnp2 in Genome Data Viewer
    Location:
    16 A1; 16 5.83 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (10605799..10606519, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (10787935..10788655, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53935 Neighboring gene STARR-seq mESC enhancer starr_40095 Neighboring gene STARR-positive B cell enhancer ABC_E3162 Neighboring gene suppressor of cytokine signaling 1 Neighboring gene protamine 3 Neighboring gene protamine 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables zinc ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in acrosome reaction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within acrosome reaction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within binding of sperm to zona pellucida IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within flagellated sperm motility IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in penetration of zona pellucida IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within penetration of zona pellucida IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of protein processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in sperm DNA condensation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in spermatogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in male germ cell nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in male germ cell nucleus TAS
    Traceable Author Statement
    more info
    PubMed 
    part_of nucleosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    nuclear transition protein 2
    Names
    transition protein 2 (alt.)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013694.4NP_038722.3  nuclear transition protein 2

      See identical proteins and their annotated locations for NP_038722.3

      Status: PROVISIONAL

      Source sequence(s)
      BC092529
      Consensus CDS
      CCDS27953.1
      UniProtKB/Swiss-Prot
      P11378, Q91XK4
      Related
      ENSMUSP00000053078.8, ENSMUST00000051297.9
      Conserved Domains (1) summary
      pfam01254
      Location:1113
      TP2; Nuclear transition protein 2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      10605799..10606519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)