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    Nup50l nucleoporin 50 like [ Mus musculus (house mouse) ]

    Gene ID: 78482, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Nup50lprovided by MGI
    Official Full Name
    nucleoporin 50 likeprovided by MGI
    Primary source
    MGI:MGI:1925732
    See related
    Ensembl:ENSMUSG00000072878 AllianceGenome:MGI:1925732
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nup50; Npap60; 1700123L14Rik
    Summary
    Predicted to be involved in protein import into nucleus. Predicted to be located in nuclear membrane and nucleoplasm. Orthologous to human NUP50 (nucleoporin 50). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See Nup50l in Genome Data Viewer
    Location:
    6 D3; 6 44.69 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (96141484..96143186, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (96164503..96166205, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene Neighboring gene RIKEN cDNA 2900060L22 gene Neighboring gene STARR-seq mESC enhancer starr_16753 Neighboring gene STARR-seq mESC enhancer starr_16754 Neighboring gene calmodulin 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_16755 Neighboring gene TAFA chemokine like family member 1 Neighboring gene STARR-seq mESC enhancer starr_16758 Neighboring gene STARR-seq mESC enhancer starr_16759 Neighboring gene STARR-seq mESC enhancer starr_16760 Neighboring gene predicted gene, 22971 Neighboring gene predicted gene, 26011

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • 50 kDa nucleoporin
    • Nuclear pore complex protein Nup50
    • Nuclear pore-associated protein 60 kDa-like
    • Nucleoporin Nup50
    • nucleoporin 50 pseudogene

    Clone Names

    • MGC176152

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear envelope ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003643.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AK131738
      Related
      ENSMUST00000090061.6

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      96141484..96143186 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_030107.2: Suppressed sequence

      Description
      NM_030107.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut