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    Ttc9b tetratricopeptide repeat domain 9B [ Mus musculus (house mouse) ]

    Gene ID: 73032, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ttc9bprovided by MGI
    Official Full Name
    tetratricopeptide repeat domain 9Bprovided by MGI
    Primary source
    MGI:MGI:1920282
    See related
    Ensembl:ENSMUSG00000007944 AllianceGenome:MGI:1920282
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2900074C18Rik
    Summary
    Is expressed in several structures, including brain; ganglia; neural retina; and olfactory epithelium. Orthologous to human TTC9B (tetratricopeptide repeat domain 9B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in cortex adult (RPKM 102.2), frontal lobe adult (RPKM 80.2) and 4 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ttc9b in Genome Data Viewer
    Location:
    7 A3; 7 15.95 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (27353349..27355632)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (27653924..27656207)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6525 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28376489-28376676 Neighboring gene STARR-positive B cell enhancer ABC_E11346 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28377425-28377608 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene thymoma viral proto-oncogene 2 Neighboring gene STARR-seq mESC enhancer starr_18379 Neighboring gene predicted gene, 38973 Neighboring gene mitogen-activated protein kinase kinase kinase 10 Neighboring gene STARR-seq mESC enhancer starr_18383 Neighboring gene zinc finger protein 607B Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28474189-28474376 Neighboring gene STARR-seq mESC enhancer starr_18384

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Clone Names

    • MGC107339

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    tetratricopeptide repeat protein 9B
    Names
    TPR repeat protein 9B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028417.1NP_082693.1  tetratricopeptide repeat protein 9B

      See identical proteins and their annotated locations for NP_082693.1

      Status: PROVISIONAL

      Source sequence(s)
      BC089566
      Consensus CDS
      CCDS21028.1
      UniProtKB/Swiss-Prot
      Q8BYN8, Q9D6E4
      Related
      ENSMUSP00000008088.8, ENSMUST00000008088.9
      Conserved Domains (2) summary
      sd00006
      Location:133163
      TPR; TPR repeat [structural motif]
      cl26002
      Location:150218
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      27353349..27355632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)