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    Brd3os bromodomain containing 3, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 100504116, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Brd3osprovided by MGI
    Official Full Name
    bromodomain containing 3, opposite strandprovided by MGI
    Primary source
    MGI:MGI:106557
    See related
    Ensembl:ENSMUSG00000109946 AllianceGenome:MGI:106557
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm20071; A230069D13; D2Bwg1423e
    Summary
    Orthologous to human BRD3OS (BRD3 opposite strand). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in cortex adult (RPKM 11.3), CNS E18 (RPKM 11.1) and 19 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Brd3os in Genome Data Viewer
    Location:
    2 A3; 2 19.38 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (27332486..27334233)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (27442436..27444221)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene sarcosine dehydrogenase Neighboring gene vav 2 oncogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:27159262-27159371 Neighboring gene Vav2R10 erythroid cis-regulatory module Neighboring gene Vav2R3 erythroid cis-regulatory module Neighboring gene STARR-seq mESC enhancer starr_04000 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:27269900-27270101 Neighboring gene Vav2R7 erythroid cis-regulatory module Neighboring gene STARR-seq mESC enhancer starr_04002 Neighboring gene Vav2R5 erythroid cis-regulatory module Neighboring gene microRNA 7578 Neighboring gene bromodomain containing 3 Neighboring gene makorin, ring finger protein, 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, et al. Genome Res, 1997 Nov. PMID 9371744, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    putative uncharacterized protein BRD3OS

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360790.2 → NP_001347719.1  putative uncharacterized protein BRD3OS

      Status: VALIDATED

      Source sequence(s)
      AL772282
      Consensus CDS
      CCDS89457.1
      UniProtKB/TrEMBL
      A0A1B0GRB6
      Related
      ENSMUSP00000147455.2, ENSMUST00000209765.2

    2. NM_001360791.2 → NP_001347720.1  putative uncharacterized protein BRD3OS

      Status: VALIDATED

      Source sequence(s)
      AL772282
      Consensus CDS
      CCDS89457.1
      UniProtKB/TrEMBL
      A0A1B0GRB6

    3. NM_001360792.2 → NP_001347721.1  putative uncharacterized protein BRD3OS

      Status: VALIDATED

      Source sequence(s)
      AL772282
      Consensus CDS
      CCDS89457.1
      UniProtKB/TrEMBL
      A0A1B0GRB6

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      27332486..27334233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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