Cln3 Cln3 [Drosophila melanogaster (fruit fly)] - Gene

Summary

Official Symbol: Cln3provided by FlyBase
Official Full Name: Cln3provided by FlyBase
Primary source: FLYBASE:FBgn0036756
Locus tag: Dmel_CG5582
See related: AllianceGenome:FB:FBgn0036756
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Drosophila melanogaster
Lineage: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as: CG5582; cln3; CLN3; Dmel\CG5582
Summary: Predicted to enable transmembrane transporter activity. Involved in determination of adult lifespan; regulation of JNK cascade; and response to oxidative stress. Located in several cellular components, including apical plasma membrane; late endosome; and microvillus membrane. Is expressed in adult head and organism. Used to study neuronal ceroid lipofuscinosis 1. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 3. Orthologous to human CLN3 (CLN3 lysosomal/endosomal transmembrane protein, battenin). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Annotation release	Status	Assembly	Chr	Location
Release 6.54	current	Release 6 plus ISO1 MT (GCF_000001215.4)	3L	NT_037436.4 (17809231..17814119, complement)
Release 5.57	previous assembly	Release 5 (GCF_000001215.2)	3L	NT_037436.3 (17802331..17807219, complement)

Chromosome 3L - NT_037436.4 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

CLN3 is strongly expressed in the excretory and osmoregulatory Malpighian tubules.
Title: in vivo localization of the neuronal ceroid lipofuscinosis proteins, CLN3 and CLN7, at endogenous expression levels.
lack of CLN3 function leads to a failure to manage the response to oxidative stress.
Title: The Batten disease gene CLN3 is required for the response to oxidative stress.
CLN3 interacts with Notch and Jun N-terminal kinase signalling pathways.
Title: Interactions between the juvenile Batten disease gene, CLN3, and the Notch and JNK signalling pathways.

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

Function	Evidence Code	Pubs
enables transmembrane transporter activity	ISM Inferred from Sequence Model more info	PubMed

Process	Evidence Code	Pubs
involved_in determination of adult lifespan	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in lysosome organization	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of JNK cascade	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of intracellular pH	IBA Inferred from Biological aspect of Ancestor more info
involved_in response to oxidative stress	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in transmembrane transport	ISM Inferred from Sequence Model more info	PubMed

Component	Evidence Code	Pubs
located_in apical plasma membrane	IDA Inferred from Direct Assay more info	PubMed
located_in late endosome	IDA Inferred from Direct Assay more info	PubMed
is_active_in lysosome	IBA Inferred from Biological aspect of Ancestor more info
located_in lysosome	IDA Inferred from Direct Assay more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in membrane	ISM Inferred from Sequence Model more info	PubMed
located_in microvillus membrane	IDA Inferred from Direct Assay more info	PubMed
located_in mitochondrial membrane	IDA Inferred from Direct Assay more info	PubMed
located_in vesicle	IDA Inferred from Direct Assay more info	PubMed