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    Slfnlnc schlafen long noncoding RNA [ Mus musculus (house mouse) ]

    Gene ID: 100043636, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Slfnlncprovided by MGI
    Official Full Name
    schlafen long noncoding RNAprovided by MGI
    Primary source
    MGI:MGI:2144254
    See related
    Ensembl:ENSMUSG00000087107 AllianceGenome:MGI:2144254
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI662270; MERRICAL; Schlafenlnc
    Expression
    Biased expression in liver E14 (RPKM 62.1), liver E14.5 (RPKM 47.5) and 4 other tissues See more
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    Genomic context

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    See Slfnlnc in Genome Data Viewer
    Location:
    11 C; 11 50.3 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (83114402..83117410)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (83223576..83226584)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_30189 Neighboring gene schlafen 4 Neighboring gene schlafen 3 Neighboring gene STARR-positive B cell enhancer ABC_E3002 Neighboring gene STARR-positive B cell enhancer ABC_E1423 Neighboring gene STARR-positive B cell enhancer ABC_E10700 Neighboring gene STARR-seq mESC enhancer starr_30190 Neighboring gene STARR-seq mESC enhancer starr_30191 Neighboring gene predicted gene, 38924 Neighboring gene schlafen 4 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic dissection of the impact of lncRNA AI662270 during the development of atherosclerosis. Hong Y, et al. J Transl Med, 2023 Feb 8. PMID 36755320, Free PMC Article
    2. Deficiency of lncRNA MERRICAL abrogates macrophage chemotaxis and diabetes-associated atherosclerosis. Chen J, et al. Cell Rep, 2024 Mar 26. PMID 38428421, Free PMC Article
    3. Long noncoding RNA AI662270 promotes kidney fibrosis through enhancing METTL3-mediated m(6) A modification of CTGF mRNA. Sun Y, et al. FASEB J, 2023 Aug. PMID 37389924
    4. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    5. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Long noncoding RNA AI662270 promotes kidney fibrosis through enhancing METTL3-mediated m[6] A modification of CTGF mRNA.
      Title: Long noncoding RNA AI662270 promotes kidney fibrosis through enhancing METTL3-mediated m(6) A modification of CTGF mRNA.
    2. Genetic dissection of the impact of lncRNA AI662270 during the development of atherosclerosis.
      Title: Genetic dissection of the impact of lncRNA AI662270 during the development of atherosclerosis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015519.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL603711
      Related
      ENSMUST00000320412.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      83114402..83117410
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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