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    DLG1-AS1 DLG1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100507086, updated on 10-Dec-2024

    Summary

    Official Symbol
    DLG1-AS1provided by HGNC
    Official Full Name
    DLG1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:44154
    See related
    Ensembl:ENSG00000227375 AllianceGenome:HGNC:44154
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 2.5), thyroid (RPKM 0.4) and 5 other tissues See more
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    Genomic context

    See DLG1-AS1 in Genome Data Viewer
    Location:
    3q29
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (197298247..197303751)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (200019512..200025001)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (197025118..197030622)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15081 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15082 Neighboring gene MELTF antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15083 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15084 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:196756444-196757080 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:196757081-196757717 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:196758105-196759304 Neighboring gene melanotransferrin Neighboring gene MPRA-validated peak4992 silencer Neighboring gene discs large MAGUK scaffold protein 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:196860144-196860342 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:196930580-196931118 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15086 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15087 Neighboring gene microRNA 4797 Neighboring gene uncharacterized LOC101926923 Neighboring gene uncharacterized LOC124906373

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038289.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092937, AW173272, BC039329
      Related
      ENST00000430666.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      197298247..197303751
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      200019512..200025001
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)