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    LINC02790 long intergenic non-protein coding RNA 2790 [ Homo sapiens (human) ]

    Gene ID: 102723661, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02790provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2790provided by HGNC
    Primary source
    HGNC:HGNC:54313
    See related
    Ensembl:ENSG00000237435 AllianceGenome:HGNC:54313
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 5.8) See more
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    Genomic context

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    See LINC02790 in Genome Data Viewer
    Location:
    1p21.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (95992068..96022880)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (95840037..95870758)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (96457624..96488436)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:95983694-95984619 Neighboring gene long intergenic non-protein coding RNA 2607 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96048206-96048858 Neighboring gene uncharacterized LOC101928219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:96134923-96135424 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:96135425-96135924 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:96207937-96209136 Neighboring gene uncharacterized LOC124904592 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96468667-96469209 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96469210-96469751 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:96689610-96690110 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96724805-96725445 Neighboring gene RNA, U1 small nuclear 130, pseudogene Neighboring gene long intergenic non-protein coding RNA 1787 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:96828291-96829490

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125991.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI025778, BX095322, KF454988
      Related
      ENST00000451675.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      95992068..96022880
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      95840037..95870758
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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