U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    MTSSB mitochondrially targeted single-stranded DNA binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826707, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    MTSSB
    Official Full Name
    mitochondrially targeted single-stranded DNA binding protein
    Primary source
    TAIR:AT4G11060
    Locus tag
    AT4G11060
    See related
    Araport:AT4G11060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    mitochondrially targeted single-stranded DNA binding protein; T22B4.40; T22B4_40
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See MTSSB in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (6754515..6756595, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene glycosyl hydrolase 9C3 Neighboring gene WRKY family transcription factor Neighboring gene HMG (high mobility group) box protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis SSB1, a Mitochondrial Single-Stranded DNA-Binding Protein, is Involved in ABA Response and Mitochondrial RNA Splicing. Qian J, et al. Plant Cell Physiol, 2021 Nov 10. PMID 34185867
    2. Characterization of a mitochondrially targeted single-stranded DNA-binding protein in Arabidopsis thaliana. Edmondson AC, et al. Mol Genet Genomics, 2005 Apr. PMID 15744502
    3. Arabidopsis thaliana organelles mimic the T7 phage DNA replisome with specific interactions between Twinkle protein and DNA polymerases Pol1A and Pol1B. Morley SA, et al. BMC Plant Biol, 2019 Jun 6. PMID 31170927, Free PMC Article
    4. Plant organellar DNA polymerases repair double-stranded breaks by microhomology-mediated end-joining. García-Medel PL, et al. Nucleic Acids Res, 2019 Apr 8. PMID 30698803, Free PMC Article
    5. Telomerase Interaction Partners-Insight from Plants. Fulnečková J, et al. Int J Mol Sci, 2021 Dec 29. PMID 35008793, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. may play a role in mitochondrial DNA recombination
      Title: Characterization of a mitochondrially targeted single-stranded DNA-binding protein in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_117176.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mitochondrial mRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    mitochondrially targeted single-stranded DNA binding protein
    NP_192844.2
    • mitochondrially targeted single-stranded DNA binding protein (MTSSB); FUNCTIONS IN: single-stranded DNA binding; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT3G18580.1); Has 3842 Blast hits to 3842 proteins in 1060 species: Archae - 0; Bacteria - 2446; Metazoa - 112; Fungi - 0; Plants - 68; Viruses - 25; Other Eukaryotes - 1191 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6754515..6756595 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117176.3 → NP_192844.2  mitochondrially targeted single-stranded DNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192844.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82512, Q84J78, Q9T011
      UniProtKB/TrEMBL
      A0A178V0I9, A0A654FN52, Q546B8
      Conserved Domains (1) summary
      pfam00436
      Location:71 → 175
      SSB; Single-strand binding protein family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84J78.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools