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    LINC02825 long intergenic non-protein coding RNA 2825 [ Homo sapiens (human) ]

    Gene ID: 283435, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02825provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2825provided by HGNC
    Primary source
    HGNC:HGNC:27477
    See related
    AllianceGenome:HGNC:27477
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LINC02825 in Genome Data Viewer
    Location:
    12q24.32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (126400792..126449327, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (126409561..126457812, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (126885338..126933873, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927531 Neighboring gene uncharacterized LOC107984448 Neighboring gene uncharacterized LOC124903048 Neighboring gene long intergenic non-protein coding RNA 2350 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:126932549-126933748 Neighboring gene long intergenic non-protein coding RNA 2347 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:126937681-126938182 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:126938183-126938682 Neighboring gene family with sequence similarity 32 member E, pseudogene Neighboring gene Sharpr-MPRA regulatory region 7999 Neighboring gene piggyBac transposable element derived 3 pseudogene Neighboring gene piggyBac transposable element derived 3 pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_147498.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005868, AC007368

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      126400792..126449327 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NW_003315940.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      179637..180542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      126409561..126457812 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)