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    PKP4-AS1 PKP4 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100129029, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PKP4-AS1provided by HGNC
    Official Full Name
    PKP4 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:52580
    See related
    Ensembl:ENSG00000204380 AllianceGenome:HGNC:52580
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in kidney (RPKM 1.5), brain (RPKM 1.3) and 25 other tissues See more
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    Genomic context

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    See PKP4-AS1 in Genome Data Viewer
    Location:
    2q24.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (158658337..158735002, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (159115156..159191822, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (159514849..159591514, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene plakophilin 4 Neighboring gene ribosomal protein L7a pseudogene 22 Neighboring gene uncharacterized LOC105373715 Neighboring gene Sharpr-MPRA regulatory region 6347 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:159579921-159580426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:159581263-159581762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:159601320-159601820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:159601821-159602321 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:159639703-159640202 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_53410 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_53422 Neighboring gene uncharacterized LOC124907901 Neighboring gene death associated protein like 1 Neighboring gene olfactory receptor family 7 subfamily E member 89 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • FLJ44380, AC005042.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135242.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005042
      Related
      ENST00000342892.4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      158658337..158735002 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      159115156..159191822 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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