USP2-AS1 USP2 antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: USP2-AS1provided by HGNC
Official Full Name: USP2 antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:48673
See related: Ensembl:ENSG00000245248 AllianceGenome:HGNC:48673
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: gLINC; THY1-AS1
Expression: Biased expression in testis (RPKM 4.5), heart (RPKM 0.5) and 8 other tissues See more
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Genomic context

Location:: 11q23.3

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	11	NC_000011.10 (119381778..119499233)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	11	NC_060935.1 (119403309..119520748)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	11	NC_000011.9 (119252488..119369944)

Chromosome 11 - NC_000011.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The long noncoding RNA glycoLINC assembles a lower glycolytic metabolon to promote glycolysis.
Title: The long noncoding RNA glycoLINC assembles a lower glycolytic metabolon to promote glycolysis.
Hypoxia-Regulated lncRNA USP2-AS1 Drives Head and Neck Squamous Cell Carcinoma Progression.
Title: Hypoxia-Regulated lncRNA USP2-AS1 Drives Head and Neck Squamous Cell Carcinoma Progression.
Downregulation of lncRNA USP2AS1 in the placentas of pregnant women with nondiabetic fetal macrosomia promotes trophoblast cell proliferation.
Title: Downregulation of lncRNA USP2‑AS1 in the placentas of pregnant women with non‑diabetic fetal macrosomia promotes trophoblast cell proliferation.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

WI-19346 (e-PCR)
- UniSTS:23060

RH98444 (e-PCR)
- UniSTS:84830

D11S3099 (e-PCR)
- UniSTS:152194

STS-Z40916 (e-PCR)
- UniSTS:21380

RH123652 (e-PCR)
- UniSTS:136074

D11S3748 (e-PCR)
- UniSTS:152978

RH11662 (e-PCR)
- UniSTS:47254

THY1 (e-PCR)
- UniSTS:11448

SHGC-8027 (e-PCR)
- UniSTS:12475

G63536 (e-PCR)
- UniSTS:140498

RH64909 (e-PCR)
- UniSTS:81111

RH15909 (e-PCR)
- UniSTS:18921

Other Names

USP2 antisense RNA 1 (head to head)
glycoLINC

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.