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    CRPPA-AS1 CRPPA antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100506025, updated on 10-Dec-2024

    Summary

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    Official Symbol
    CRPPA-AS1provided by HGNC
    Official Full Name
    CRPPA antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:48962
    See related
    Ensembl:ENSG00000229688 AllianceGenome:HGNC:48962
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ISPD-AS1
    Expression
    Restricted expression toward testis (RPKM 5.1) See more
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    Genomic context

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    See CRPPA-AS1 in Genome Data Viewer
    Location:
    7p21.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (16210486..16270604)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (16340253..16400382)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (16250111..16310229)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375167 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:15821381-15822127 Neighboring gene Sharpr-MPRA regulatory region 14985 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:15980075-15980647 Neighboring gene Sharpr-MPRA regulatory region 6485 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:16116228-16117427 Neighboring gene NANOG hESC enhancer GRCh37_chr7:16117754-16118288 Neighboring gene MPRA-validated peak6410 silencer Neighboring gene CDP-L-ribitol pyrophosphorylase A Neighboring gene NANOG hESC enhancer GRCh37_chr7:16254865-16255366 Neighboring gene ribosomal protein L36a pseudogene 29 Neighboring gene MPRA-validated peak6411 silencer Neighboring gene uncharacterized LOC105375168 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17981 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:16541518-16542018 Neighboring gene NANOG hESC enhancer GRCh37_chr7:16551577-16552078 Neighboring gene sclerostin domain containing 1 Neighboring gene leucine rich repeat containing 72

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • ISPD antisense RNA 1

    Clone Names

    • AC004741.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038946.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC004741, BC034288, DB462496
      Related
      ENST00000438573.5

    2. NR_038947.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon, includes an alternate exon and uses an alternate splice site, compared to variant 1.
      Source sequence(s)
      BC034288, BX115602, DB462496
      Related
      ENST00000655000.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      16210486..16270604
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      16340253..16400382
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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