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    LOC101928409 uncharacterized LOC101928409 [ Homo sapiens (human) ]

    Gene ID: 101928409, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101928409
    Gene description
    uncharacterized LOC101928409
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in heart (RPKM 3.4), gall bladder (RPKM 2.4) and 11 other tissues See more
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    Genomic context

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    See LOC101928409 in Genome Data Viewer
    Location:
    4q34.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (173508117..173514742)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (176840982..176850746)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene stimulator of chondrogenesis 1 Neighboring gene VISTA enhancer hs2501 Neighboring gene RNA, U6 small nuclear 1096, pseudogene Neighboring gene uncharacterized LOC112267917 Neighboring gene NANOG hESC enhancer GRCh37_chr4:174410607-174411181 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22160 Neighboring gene uncharacterized LOC124900815 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:174439311-174440510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:174445895-174446436 Neighboring gene HAND2 antisense RNA 1 Neighboring gene heart and neural crest derivatives expressed 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      173508117..173514742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_939466.3 RNA Sequence

    2. XR_939467.3 RNA Sequence

    3. XR_001741459.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      176840982..176850746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007075152.1 RNA Sequence

    2. XR_007075154.1 RNA Sequence

    3. XR_007075153.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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