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    Cyp4f16 cytochrome P450, family 4, subfamily f, polypeptide 16 [ Mus musculus (house mouse) ]

    Gene ID: 70101, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Cyp4f16provided by MGI
    Official Full Name
    cytochrome P450, family 4, subfamily f, polypeptide 16provided by MGI
    Primary source
    MGI:MGI:1917351
    See related
    Ensembl:ENSMUSG00000048440 AllianceGenome:MGI:1917351
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310021J05Rik
    Summary
    Is expressed in several structures, including cardiovascular system; central nervous system; endocrine gland; genitourinary system; and intestine. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in duodenum adult (RPKM 50.9), large intestine adult (RPKM 37.6) and 19 other tissues See more
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    Genomic context

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    See Cyp4f16 in Genome Data Viewer
    Location:
    17 B1; 17 17.59 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (32755517..32770772)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (32536545..32551798)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 4, subfamily f, polypeptide 39 Neighboring gene STARR-seq mESC enhancer starr_42380 Neighboring gene STARR-seq mESC enhancer starr_42381 Neighboring gene cytochrome P450, family 4, subfamily f, polypeptide 17 Neighboring gene STARR-seq mESC enhancer starr_42382 Neighboring gene STARR-seq mESC enhancer starr_42383 Neighboring gene STARR-positive B cell enhancer ABC_E8998 Neighboring gene STARR-seq mESC enhancer starr_42384 Neighboring gene STARR-seq mESC enhancer starr_42386 Neighboring gene predicted gene, 41570 Neighboring gene STARR-seq mESC enhancer starr_42387 Neighboring gene predicted gene 8497

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Construction of a multi-functional cDNA library specific for mouse pancreatic islets and its application to microarray. Nishimura M, et al. DNA Res, 2004 Oct 31. PMID 15747579
    2. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    3. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    4. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (4) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    cytochrome P450, family 4, subfamily f, polypeptide 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356302.1 → NP_001343231.1  cytochrome P450, family 4, subfamily f, polypeptide 16 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK078557, AK083886, BB581939, BP758307
      Conserved Domains (1) summary
      pfam00067
      Location:2 → 394
      p450; Cytochrome P450

    2. NM_001356303.1 → NP_001343232.1  cytochrome P450, family 4, subfamily f, polypeptide 16 isoform 1

      Status: VALIDATED

      Source sequence(s)
      BB581939, BP758307, CT033759, CT485616
      Consensus CDS
      CCDS28619.1
      UniProtKB/TrEMBL
      Q3UK06, Q99N17
      Related
      ENSMUSP00000131058.2, ENSMUST00000169591.8
      Conserved Domains (1) summary
      pfam00067
      Location:52 → 514
      p450; Cytochrome P450

    3. NM_024442.2 → NP_077762.1  cytochrome P450, family 4, subfamily f, polypeptide 16 isoform 1

      See identical proteins and their annotated locations for NP_077762.1

      Status: VALIDATED

      Source sequence(s)
      AK078557, BB581939, BP758307
      Consensus CDS
      CCDS28619.1
      UniProtKB/TrEMBL
      Q3UK06, Q99N17
      Related
      ENSMUSP00000003416.9, ENSMUST00000003416.15
      Conserved Domains (1) summary
      pfam00067
      Location:52 → 514
      p450; Cytochrome P450

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      32755517..32770772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006524882.3 → XP_006524945.1  cytochrome P450, family 4, subfamily f, polypeptide 16 isoform X1

      See identical proteins and their annotated locations for XP_006524945.1

      Conserved Domains (1) summary
      pfam00067
      Location:2 → 394
      p450; Cytochrome P450

    2. XM_017317633.1 → XP_017173122.1  cytochrome P450, family 4, subfamily f, polypeptide 16 isoform X2

      Conserved Domains (1) summary
      pfam00067
      Location:1 → 342
      p450; Cytochrome P450

    3. XM_006524884.2 → XP_006524947.1  cytochrome P450, family 4, subfamily f, polypeptide 16 isoform X2

      Conserved Domains (1) summary
      pfam00067
      Location:1 → 342
      p450; Cytochrome P450

    RNA

    1. XR_004939574.1 RNA Sequence

    2. XR_385364.4 RNA Sequence

    3. XR_004939575.1 RNA Sequence

      Related
      ENSMUST00000165515.8
    Nucleotide Protein Strain
    Heading Accession and Version

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