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    lncRNA:CR43839 long non-coding RNA:CR43839 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 14462804, updated on 11-Sep-2024

    Summary

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    Official Symbol
    lncRNA:CR43839provided by FlyBase
    Official Full Name
    long non-coding RNA:CR43839provided by FlyBase
    Primary source
    FLYBASE:FBgn0264391
    Locus tag
    Dmel_CR43839
    See related
    AllianceGenome:FB:FBgn0264391
    Gene type
    ncRNA
    RNA name
    lncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CR43839; Dmel\CR43839
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    Genomic context

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    See lncRNA:CR43839 in Genome Data Viewer
    Location:
    37E3-37E3; 2-54 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (19470844..19471627, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (19470844..19471627, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45722 Neighboring gene long non-coding RNA:CR45723 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Specification and spatial arrangement of cells in the germline stem cell niche of the Drosophila ovary depend on the Maf transcription factor Traffic jam. Panchal T, et al. PLoS Genet, 2017 May. PMID 28542174, Free PMC Article
    2. Critical roles of long noncoding RNAs in Drosophila spermatogenesis. Wen K, et al. Genome Res, 2016 Sep. PMID 27516619, Free PMC Article
    3. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
    4. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    • lncRNA:CR43839-RA; Dmel\lncRNA:CR43839-RA; CR43839-RA; Dmel\CR43839-RA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      19470844..19471627 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_073807.1 RNA Sequence

      Status: REVIEWED

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.