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    CG13293 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38695, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13293provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0035677
    Locus tag
    Dmel_CG13293
    See related
    AllianceGenome:FB:FBgn0035677
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13293
    Summary
    Predicted to enable transcription corepressor activity. Predicted to be involved in DNA-templated transcription. Predicted to be active in nucleus. Is expressed in adult head. Orthologous to human SCAI (suppressor of cancer cell invasion). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13293 in Genome Data Viewer
    Location:
    65A5-65A5; 3-16 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (6082883..6092188)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (6075983..6085288)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene short spindle 6 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene logjam

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article
    2. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article
    3. A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. Neely GG, et al. Cell, 2010 Apr 2. PMID 20371351, Free PMC Article
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
    5. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables transcription corepressor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13293-PB
    CG13293-PC
    CG13293-PD
    CG13293-PE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      6082883..6092188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001274534.2 → NP_001261463.1  uncharacterized protein Dmel_CG13293, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261463.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PEA7
      Conserved Domains (1) summary
      pfam12070
      Location:20 → 546
      SCAI; Protein SCAI

    2. NM_139767.2 → NP_648024.2  uncharacterized protein Dmel_CG13293, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648024.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VRT9
      Conserved Domains (1) summary
      pfam12070
      Location:20 → 551
      SCAI; Protein SCAI

    3. NM_001274535.1 → NP_001261464.1  uncharacterized protein Dmel_CG13293, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261464.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PER3
      Conserved Domains (1) summary
      pfam12070
      Location:20 → 551
      SCAI; Protein SCAI

    4. NM_001274536.1 → NP_001261465.1  uncharacterized protein Dmel_CG13293, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261465.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VRT9
      Conserved Domains (1) summary
      pfam12070
      Location:20 → 551
      SCAI; Protein SCAI
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PEA7 M9PEA7
    M9PER3 M9PER3
    Q9VRT9 Q9VRT9

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