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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001257376.1 → NP_001244305.1 sec1 family domain-containing protein 1 isoform c
See identical proteins and their annotated locations for NP_001244305.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream, in-frame start codon, compared to variant 1. The encoded isoform (c) has a shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
AK298622, BG212062, DA151789
- Consensus CDS
-
CCDS58308.1
- UniProtKB/TrEMBL
-
A0A7I2V4R0
- Related
- ENSP00000379870.2, ENST00000396629.6
- Conserved Domains (1) summary
-
- pfam00995
Location:1 → 537
- Sec1; Sec1 family
-
NM_001283031.1 → NP_001269960.1 sec1 family domain-containing protein 1 isoform d
See identical proteins and their annotated locations for NP_001269960.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 5' region and initiates translation at a downstream, in-frame start codon, compared to variant 1. The encoded isoform (d) has a shorter N-terminus, compared to isoform a. Variants 4 and 6 encode the same isoform (d).
- Source sequence(s)
-
AK299222, BG212062, DB105324
- Consensus CDS
-
CCDS91858.1
- UniProtKB/TrEMBL
- A0A7I2V448, B7Z5N7
- Related
- ENSP00000504658.1, ENST00000676520.1
- Conserved Domains (1) summary
-
- pfam00995
Location:3 → 444
- Sec1; Sec1 family
-
NM_001283032.1 → NP_001269961.1 sec1 family domain-containing protein 1 isoform e
See identical proteins and their annotated locations for NP_001269961.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks an exon in the 5' region and initiates translation at an alternate downstream start codon, compared to variant 1. The encoded isoform (e) is shorter and has a distinct N-terminus, compared to isoform a.
- Source sequence(s)
-
AF067205, AK301406, BG212062, BX325898, DB105324
- UniProtKB/TrEMBL
- A0A7I2V4R0, B7Z738
- Conserved Domains (1) summary
-
- pfam00995
Location:16 → 570
- Sec1; Sec1 family
-
NM_001283033.1 → NP_001269962.1 sec1 family domain-containing protein 1 isoform d
See identical proteins and their annotated locations for NP_001269962.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks three exons in the 5' region and initiates translation at an alternate downstream start codon, compared to variant 1. The encoded isoform (d) has a shorter N-terminus, compared to isoform a. Variants 4 and 6 encode the same isoform (d).
- Source sequence(s)
-
AK307960, BG212062, DB105324, DN993082
- Consensus CDS
-
CCDS91858.1
- UniProtKB/TrEMBL
- A0A7I2V448, B7Z5N7
- Related
- ENSP00000502860.1, ENST00000676674.1
- Conserved Domains (1) summary
-
- pfam00995
Location:3 → 444
- Sec1; Sec1 family
-
NM_016106.4 → NP_057190.2 sec1 family domain-containing protein 1 isoform a
See identical proteins and their annotated locations for NP_057190.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AB020724, AL121852, BG212062
- Consensus CDS
-
CCDS9639.1
- UniProtKB/Swiss-Prot
- A8K2Z5, B7Z4U7, B7Z594, O60754, O94990, Q7Z529, Q8WVM8, Q9BZI3, Q9UNL3, Q9Y6A8
- UniProtKB/TrEMBL
- A0A7I2V5Z4, Q53GW1
- Related
- ENSP00000390783.2, ENST00000458591.7
- Conserved Domains (1) summary
-
- pfam00995
Location:44 → 629
- Sec1; Sec1 family
-
NM_182835.2 → NP_878255.1 sec1 family domain-containing protein 1 isoform b
See identical proteins and their annotated locations for NP_878255.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an exon in the 5' region and initiates translation at a downstream, in-frame start codon, compared to variant 1. The encoded isoform (b) has a shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
AK316212, BG212062, DB105324
- Consensus CDS
-
CCDS45092.1
- UniProtKB/TrEMBL
-
A0A7I2V4R0
- Related
- ENSP00000443010.2, ENST00000544052.6
- Conserved Domains (1) summary
-
- pfam00995
Location:1 → 562
- Sec1; Sec1 family
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000014.9 Reference GRCh38.p14 Primary Assembly
- Range
-
30622254..30735850
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047431165.1 → XP_047287121.1 sec1 family domain-containing protein 1 isoform X2
- UniProtKB/TrEMBL
- A0A7I2V362, A0A7I2V4B8, A0A7I2V590
- Related
- ENSP00000504310.1, ENST00000678399.1
-
XM_047431166.1 → XP_047287122.1 sec1 family domain-containing protein 1 isoform X3
- UniProtKB/TrEMBL
- G3V5E2, H0YIZ7
- Related
- ENSP00000450546.2, ENST00000554437.6
-
XM_017021113.3 → XP_016876602.1 sec1 family domain-containing protein 1 isoform X4
- UniProtKB/TrEMBL
-
A0A7I2YQR2
- Related
- ENSP00000504309.1, ENST00000678760.1
-
XM_005267469.3 → XP_005267526.1 sec1 family domain-containing protein 1 isoform X1
See identical proteins and their annotated locations for XP_005267526.1
- UniProtKB/TrEMBL
-
A0A7I2V4R0
- Related
- ENSP00000504124.1, ENST00000677340.1
- Conserved Domains (1) summary
-
- pfam00995
Location:19 → 604
- Sec1; Sec1 family
RNA
-
XR_007063993.1 RNA Sequence
-
XR_007063994.1 RNA Sequence
-
XR_007063995.1 RNA Sequence
-
XR_007063996.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060938.1 Alternate T2T-CHM13v2.0
- Range
-
24820073..24933666
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054375710.1 → XP_054231685.1 sec1 family domain-containing protein 1 isoform X2
- UniProtKB/TrEMBL
- A0A7I2V362, A0A7I2V4B8, A0A7I2V590
-
XM_054375711.1 → XP_054231686.1 sec1 family domain-containing protein 1 isoform X3
- UniProtKB/TrEMBL
- G3V5E2, H0YIZ7
-
XM_054375712.1 → XP_054231687.1 sec1 family domain-containing protein 1 isoform X4
- UniProtKB/TrEMBL
-
A0A7I2YQR2
-
XM_054375709.1 → XP_054231684.1 sec1 family domain-containing protein 1 isoform X1
- UniProtKB/TrEMBL
-
A0A7I2V4R0
RNA
-
XR_008488830.1 RNA Sequence
-
XR_008488831.1 RNA Sequence
-
XR_008488832.1 RNA Sequence