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    algQ anti-RNA polymerase sigma 70 factor [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 879719, updated on 11-Sep-2024

    Summary

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    Gene symbol
    algQ
    Gene description
    anti-RNA polymerase sigma 70 factor
    Locus tag
    PA5255
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (5916918..5917400, complement)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene alginate regulatory protein AlgP Neighboring gene FkbP-type peptidyl-prolyl cis-trans isomerase Neighboring gene disulfide bond formation protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Involvement of AlgQ in transcriptional regulation of pyoverdine genes in Pseudomonas aeruginosa PAO1. Ambrosi C, et al. J Bacteriol, 2005 Aug. PMID 16030202, Free PMC Article
    2. Global regulation in Pseudomonas aeruginosa: the regulatory protein AlgR2 (AlgQ) acts as a modulator of quorum sensing. Ledgham F, et al. Res Microbiol, 2003 Apr. PMID 12706510
    3. Control of mucoidy in Pseudomonas aeruginosa: transcriptional regulation of algR and identification of the second regulatory gene, algQ. Deretic V, et al. J Bacteriol, 1989 Jul. PMID 2544550, Free PMC Article
    4. Rsd family proteins make simultaneous interactions with regions 2 and 4 of the primary sigma factor. Yuan AH, et al. Mol Microbiol, 2008 Dec. PMID 18826409, Free PMC Article
    5. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Rsd and AlgQ interact with a conserved region of sigma(70), and can also strongly regulate the production of pyocyanin.
      Title: Rsd family proteins make simultaneous interactions with regions 2 and 4 of the primary sigma factor.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of proteolysis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of secondary metabolite biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    anti-RNA polymerase sigma 70 factor
    NP_253942.1
    • Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      5916918..5917400 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_253942.1 anti-RNA polymerase sigma 70 factor [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_253942.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A241XVM1
      Conserved Domains (1) summary
      cl11478
      Location:1 → 157
      Rsd_AlgQ; Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P15275.1

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