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    Gm5094 predicted gene 5094 [ Mus musculus (house mouse) ]

    Gene ID: 328839, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Gm5094provided by MGI
    Official Full Name
    predicted gene 5094provided by MGI
    Primary source
    MGI:MGI:3647348
    See related
    Ensembl:ENSMUSG00000117035 AllianceGenome:MGI:3647348
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG328839; A130033B22
    Summary
    Is expressed in nervous system. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Gm5094 in Genome Data Viewer
    Location:
    17 C; 17 27.3 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (52759603..52768793, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5619 Neighboring gene STARR-positive B cell enhancer ABC_E9959 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:52322274-52322383 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:52356867-52357020 Neighboring gene predicted gene, 19585 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:52421626-52421900 Neighboring gene STARR-seq mESC enhancer starr_42815 Neighboring gene predicted gene, 41600 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:52607808-52608039 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:52740540-52740828 Neighboring gene predicted gene 27217 Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 8 Neighboring gene STARR-seq mESC enhancer starr_42820 Neighboring gene STARR-seq mESC enhancer starr_42821 Neighboring gene STARR-seq mESC enhancer starr_42822 Neighboring gene STARR-seq mESC enhancer starr_42824 Neighboring gene STARR-seq mESC enhancer starr_42825 Neighboring gene STARR-seq mESC enhancer starr_42826 Neighboring gene STARR-seq mESC enhancer starr_42827 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000083.7 Chromosome 17 Reference GRCm39 C57BL/6J

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188909.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC121600
      Related
      ENSMUST00000233404.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      52759603..52768793 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177825.3: Suppressed sequence

      Description
      NM_177825.3: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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