U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Map3k7cl MAP3K7 C-terminal like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304131, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Map3k7clprovided by RGD
    Official Full Name
    MAP3K7 C-terminal likeprovided by RGD
    Primary source
    RGD:1359474
    See related
    EnsemblRapid:ENSRNOG00000001584 AllianceGenome:RGD:1359474
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human MAP3K7CL (MAP3K7 C-terminal like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Muscle (RPKM 73.1), Heart (RPKM 38.8) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Map3k7cl in Genome Data Viewer
    Location:
    11q11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (40276839..40321848)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (26791044..26835605)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (27208177..27251802)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L32, pseudogene 14 Neighboring gene developmental pluripotency-associated protein 5A pseudogene Neighboring gene polysaccharide biosynthesis domain containing 1, pseudogene 3 Neighboring gene uncharacterized LOC102555219

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins. Hu YH, et al. BMC Genomics, 2006 Jun 16. PMID 16780588, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    MAP3K7 C-terminal-like protein
    Names
    TAK1-like protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013979.1 → NP_001014001.1  MAP3K7 C-terminal-like protein

      See identical proteins and their annotated locations for NP_001014001.1

      Status: PROVISIONAL

      Source sequence(s)
      BC076389
      UniProtKB/TrEMBL
      F7FAX9, Q6DGF7
      Conserved Domains (1) summary
      pfam08287
      Location:64 → 139
      DASH_Spc19; Spc19

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      40276839..40321848
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039088440.2 → XP_038944368.1  MAP3K7 C-terminal-like protein isoform X2

      Related
      ENSRNOP00000002158.5, ENSRNOT00000002158.8
      Conserved Domains (1) summary
      cl27170
      Location:77 → 140
      DUF460; Protein of unknown function (DUF460)

    2. XM_006248016.5 → XP_006248078.1  MAP3K7 C-terminal-like protein isoform X1

      UniProtKB/TrEMBL
      A0A0G2K9U9
      Related
      ENSRNOP00000075139.1, ENSRNOT00000084580.3
      Conserved Domains (1) summary
      pfam08287
      Location:80 → 155
      DASH_Spc19; Spc19
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools