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    Erln endoregulin [ Mus musculus (house mouse) ]

    Gene ID: 68528, updated on 11-Dec-2024

    Summary

    Official Symbol
    Erlnprovided by MGI
    Official Full Name
    endoregulinprovided by MGI
    Primary source
    MGI:MGI:1915778
    See related
    Ensembl:ENSMUSG00000075420 AllianceGenome:MGI:1915778
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Eln; Smim6; 1110017F19Rik
    Summary
    Acts upstream of or within negative regulation of ATPase-coupled calcium transmembrane transporter activity. Located in endoplasmic reticulum membrane. Orthologous to human SMIM6 (small integral membrane protein 6). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in colon adult (RPKM 18.4), large intestine adult (RPKM 17.6) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Erln in Genome Data Viewer
    Location:
    11 E2; 11 80.91 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (115802843..115804743)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (115912017..115913917)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene myosin XVB Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:115759828-115760025 Neighboring gene RecQ protein-like 5 Neighboring gene small integral membrane protein 5 Neighboring gene STARR-positive B cell enhancer ABC_E1850 Neighboring gene STARR-seq mESC enhancer starr_31180 Neighboring gene SAP30 binding protein Neighboring gene STARR-seq mESC enhancer starr_31181 Neighboring gene predicted gene, 39474 Neighboring gene STARR-seq mESC enhancer starr_31187 Neighboring gene RIKEN cDNA B230344G16 gene Neighboring gene integrin beta 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane PubMed 
    located_in membrane PubMed 

    General protein information

    Preferred Names
    small integral membrane protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162998.1NP_001156470.1  small integral membrane protein 6

      See identical proteins and their annotated locations for NP_001156470.1

      Status: VALIDATED

      Source sequence(s)
      AK003745
      Consensus CDS
      CCDS56821.1
      UniProtKB/Swiss-Prot
      Q3U0I6
      Related
      ENSMUSP00000133699.2, ENSMUST00000132961.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      115802843..115804743
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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