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    Ccdc107 coiled-coil domain containing 107 [ Mus musculus (house mouse) ]

    Gene ID: 622404, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc107provided by MGI
    Official Full Name
    coiled-coil domain containing 107provided by MGI
    Primary source
    MGI:MGI:1913423
    See related
    Ensembl:ENSMUSG00000028461 AllianceGenome:MGI:1913423
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110032O22Rik
    Summary
    Predicted to be located in membrane. Orthologous to human CCDC107 (coiled-coil domain containing 107). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in kidney adult (RPKM 73.4), duodenum adult (RPKM 65.8) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc107 in Genome Data Viewer
    Location:
    4 A5; 4 23.04 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (43493365..43495921)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (43493340..43495921)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:43495064-43495217 Neighboring gene suppression inducing transmembrane adaptor 1 Neighboring gene STARR-positive B cell enhancer ABC_E834 Neighboring gene RNA component of mitochondrial RNAase P Neighboring gene Rho guanine nucleotide exchange factor 39 Neighboring gene carbonic anhydrase 9 Neighboring gene tropomyosin 2, beta Neighboring gene STARR-positive B cell enhancer ABC_E9584

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RMRP is a non-coding RNA essential for early murine development. Rosenbluh J, et al. PLoS One, 2011. PMID 22039455, Free PMC Article
    2. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC36291

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 107

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037913.2 → NP_001033002.1  coiled-coil domain-containing protein 107 precursor

      See identical proteins and their annotated locations for NP_001033002.1

      Status: VALIDATED

      Source sequence(s)
      AL732506
      Consensus CDS
      CCDS18097.1
      UniProtKB/Swiss-Prot
      A2AIN4, Q9CTB6, Q9DCC3
      Related
      ENSMUSP00000030181.6, ENSMUST00000030181.12

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      43493365..43495921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DCC3.1 GenPept UniProtKB/Swiss-Prot:Q9DCC3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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