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    Gm18409 predicted gene, 18409 [ Mus musculus (house mouse) ]

    Gene ID: 100417125, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm18409provided by MGI
    Official Full Name
    predicted gene, 18409provided by MGI
    Primary source
    MGI:MGI:5010594
    See related
    Ensembl:ENSMUSG00000121688 AllianceGenome:MGI:5010594
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm18409 in Genome Data Viewer
    Location:
    10 D1; 10 51.2 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (99474593..99477782, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (99638731..99641920, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27719 Neighboring gene glutamate decarboxylase 1, pseudogene Neighboring gene STARR-seq mESC enhancer starr_27720 Neighboring gene predicted gene, 35035 Neighboring gene STARR-seq mESC enhancer starr_27721 Neighboring gene predicted gene, 34983 Neighboring gene STARR-positive B cell enhancer ABC_E9349 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:99054852-99055053 Neighboring gene STARR-seq mESC enhancer starr_27723 Neighboring gene STARR-positive B cell enhancer ABC_E6917 Neighboring gene predicted gene, 20110 Neighboring gene predicted gene, 35101 Neighboring gene STARR-seq mESC enhancer starr_27728 Neighboring gene citrate synthase like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • mediator of cell motility 1 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038018.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC152947
      Related
      ENSMUST00000218988.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      99474593..99477782 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_018823.1: Suppressed sequence

      Description
      NG_018823.1: This RefSeq was permanently suppressed because evidence indicates that this locus is transcribed.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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