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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_030112.2 → NP_084388.2 RNA polymerase-associated protein RTF1 homolog
Status: VALIDATED
- Source sequence(s)
-
AK019305, AL844536, AW491091, BC117849, BY270385, CN532066, CN839001
- Consensus CDS
-
CCDS50673.1
- UniProtKB/Swiss-Prot
- A2AQ19, Q08EC5
- Related
- ENSMUSP00000028767.9, ENSMUST00000028767.9
- Conserved Domains (2) summary
-
- COG5296
Location:194 → 628
- COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
- pfam03126
Location:364 → 462
- Plus-3; Plus-3 domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
119505549..119565888
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036162668.1 → XP_036018561.1 RNA polymerase-associated protein RTF1 homolog isoform X3
- Conserved Domains (2) summary
-
- COG5296
Location:148 → 413
- COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
- pfam03126
Location:149 → 249
- Plus-3; Plus-3 domain
-
XM_036162666.1 → XP_036018559.1 RNA polymerase-associated protein RTF1 homolog isoform X1
- Conserved Domains (2) summary
-
- COG5296
Location:154 → 588
- COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
- pfam03126
Location:324 → 424
- Plus-3; Plus-3 domain
-
XM_036162667.1 → XP_036018560.1 RNA polymerase-associated protein RTF1 homolog isoform X2
- Conserved Domains (2) summary
-
- COG5296
Location:3 → 437
- COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
- pfam03126
Location:173 → 273
- Plus-3; Plus-3 domain