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    Gm3643 predicted gene 3643 [ Mus musculus (house mouse) ]

    Gene ID: 100042057, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm3643provided by MGI
    Official Full Name
    predicted gene 3643provided by MGI
    Primary source
    MGI:MGI:3781819
    See related
    AllianceGenome:MGI:3781819
    Gene type
    unknown
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm35256
    Expression
    Restricted expression toward testis adult (RPKM 6.5) See more

    Genomic context

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    See Gm3643 in Genome Data Viewer
    Location:
    8 B3.3; 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (71538649..71561870)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (71086005..71108291)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 709 pseudogene Neighboring gene predicted gene, 17576 Neighboring gene vomeronasal 2, receptor, pseudogene 90 Neighboring gene predicted gene 7827 Neighboring gene STARR-seq mESC enhancer starr_21808 Neighboring gene STARR-positive B cell enhancer mm9_chr8:73660786-73661086 Neighboring gene predicted gene, 38415 Neighboring gene STARR-positive B cell enhancer ABC_E8243 Neighboring gene predicted gene, 29701

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      71538649..71561870
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001778576.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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