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    Rbbp8nl RBBP8 N-terminal like [ Mus musculus (house mouse) ]

    Gene ID: 271887, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rbbp8nlprovided by MGI
    Official Full Name
    RBBP8 N-terminal likeprovided by MGI
    Primary source
    MGI:MGI:3606212
    See related
    Ensembl:ENSMUSG00000038980 AllianceGenome:MGI:3606212
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4732416F18
    Summary
    Orthologous to human RBBP8NL (RBBP8 N-terminal like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in bladder adult (RPKM 2.3), stomach adult (RPKM 2.0) and 12 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Rbbp8nl in Genome Data Viewer
    Location:
    2 H4; 2 102.8 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (179917039..179931693, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (180275246..180289900, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene microRNA 3091 Neighboring gene CDK5 and Abl enzyme substrate 2 Neighboring gene ribosomal protein S21 Neighboring gene STARR-positive B cell enhancer ABC_E333 Neighboring gene predicted gene, 29943 Neighboring gene GATA binding protein 5 Neighboring gene GATA binding protein 5, opposite strand

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1-CoREST interactome during embryonic stem cell differentiation. Barnes CE, et al. Mol Omics, 2022 Jan 17. PMID 34709266, Free PMC Article
    2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RBBP8 N-terminal-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173031.3 → NP_766619.2  RBBP8 N-terminal-like protein

      See identical proteins and their annotated locations for NP_766619.2

      Status: VALIDATED

      Source sequence(s)
      AK028610, BY714078
      Consensus CDS
      CCDS17174.1
      UniProtKB/TrEMBL
      A2ABX0, Q8CEB4
      Related
      ENSMUSP00000047237.2, ENSMUST00000038529.2
      Conserved Domains (1) summary
      pfam10482
      Location:4 → 122
      CtIP_N; Tumour-suppressor protein CtIP N-terminal domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      179917039..179931693 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006500651.2 → XP_006500714.1  RBBP8 N-terminal-like protein isoform X1

      UniProtKB/TrEMBL
      Q8CEB4
      Conserved Domains (2) summary
      PRK10263
      Location:297 → 564
      PRK10263; DNA translocase FtsK; Provisional
      pfam10482
      Location:4 → 122
      CtIP_N; tumor-suppressor protein CtIP N-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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