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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_051957.1 RefSeqGene
- Range
-
10730..48665
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001039372.4 → NP_001034461.1 HEPACAM family member 2 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform 1.
- Source sequence(s)
-
AC000119, AK096002
- Consensus CDS
-
CCDS43616.1
- UniProtKB/Swiss-Prot
- A8MVW5, B3KTT4, B4DPJ1, B9EG93, E9PDV5, Q6UXI0
- Related
- ENSP00000377980.2, ENST00000394468.7
- Conserved Domains (3) summary
-
- smart00408
Location:167 → 226
- IGc2; Immunoglobulin C-2 Type
- pfam07679
Location:149 → 232
- I-set; Immunoglobulin I-set domain
- cl11960
Location:105 → 174
- Ig; Immunoglobulin domain
-
NM_001288804.3 → NP_001275733.1 HEPACAM family member 2 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) contains an alternate in-frame exon in the 5' coding region compared to variant 1. The encoded isoform (3) is longer and lacks a predicted signal peptide compared to isoform 1.
- Source sequence(s)
-
AC000119, AK298361, BC139906
- Consensus CDS
-
CCDS75632.1
- UniProtKB/Swiss-Prot
-
A8MVW5
- Related
- ENSP00000390204.2, ENST00000453812.2
- Conserved Domains (3) summary
-
- smart00408
Location:190 → 249
- IGc2; Immunoglobulin C-2 Type
- pfam07679
Location:172 → 255
- I-set; Immunoglobulin I-set domain
- cl11960
Location:128 → 197
- Ig; Immunoglobulin domain
-
NM_001288810.3 → NP_001275739.1 HEPACAM family member 2 isoform 4 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, contains a novel 5' coding region, initiates translation at an alternate start site and lacks an exon in the 3' coding region compared to variant 1. The encoded isoform (4) is shorter and has a distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AC000119, AY358345, BC046365, BC139906
- Consensus CDS
-
CCDS75631.1
- UniProtKB/TrEMBL
-
C9JN07
- Related
- ENSP00000389592.1, ENST00000440868.5
- Conserved Domains (3) summary
-
- smart00408
Location:155 → 214
- IGc2; Immunoglobulin C-2 Type
- pfam07679
Location:137 → 220
- I-set; Immunoglobulin I-set domain
- cl11960
Location:93 → 162
- Ig; Immunoglobulin domain
-
NM_001346642.2 → NP_001333571.1 HEPACAM family member 2 isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region and uses a downstream translation start site compared to variant 1. The encoded isoform (5) contains a shorter N-terminus and lacks a predicted signal peptide compared to isoform 1.
- Source sequence(s)
-
AC000119, AC002453
-
NM_198151.4 → NP_937794.1 HEPACAM family member 2 isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, contains a novel 5' coding region, and initiates translation at an alternate start site compared to variant 1. The encoded isoform (2) has a shorter and distinct N-terminus compared to variant 1.
- Source sequence(s)
-
AC000119, AY358345, BC139906, H75859
- Consensus CDS
-
CCDS5629.1
- UniProtKB/Swiss-Prot
-
A8MVW5
- Related
- ENSP00000340532.4, ENST00000341723.8
- Conserved Domains (2) summary
-
- pfam13927
Location:136 → 211
- Ig_3; Immunoglobulin domain
- cl11960
Location:25 → 130
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000007.14 Reference GRCh38.p14 Primary Assembly
- Range
-
93188534..93232285 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011516001.3 → XP_011514303.1 HEPACAM family member 2 isoform X1
- Conserved Domains (3) summary
-
- smart00408
Location:92 → 151
- IGc2; Immunoglobulin C-2 Type
- pfam07679
Location:74 → 157
- I-set; Immunoglobulin I-set domain
- cl11960
Location:30 → 99
- Ig; Immunoglobulin domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060931.1 Alternate T2T-CHM13v2.0
- Range
-
94430593..94474339 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054357738.1 → XP_054213713.1 HEPACAM family member 2 isoform X1