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    OCEL1 occludin/ELL domain containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 615639, updated on 27-Dec-2024

    Summary

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    Gene symbol
    OCEL1
    Gene description
    occludin/ELL domain containing 1
    See related
    BGD:BT23514; Ensembl:ENSBTAG00000011135
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See OCEL1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (5872479..5874911, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345677 Neighboring gene nuclear receptor subfamily 2 group F member 6 Neighboring gene uncharacterized LOC104969050 Neighboring gene unconventional SNARE in the ER 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC151989

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in bicellular tight junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    occludin/ELL domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076386.2 → NP_001069854.2  occludin/ELL domain-containing protein 1

      See identical proteins and their annotated locations for NP_001069854.2

      Status: VALIDATED

      Source sequence(s)
      NKLS02000007
      UniProtKB/TrEMBL
      F6RA30, Q0VBX0
      Related
      ENSBTAP00000044623.2, ENSBTAT00000047416.3
      Conserved Domains (1) summary
      pfam07303
      Location:95 → 196
      Occludin_ELL; Occludin homology domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      5872479..5874911 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005208520.5 → XP_005208577.1  occludin/ELL domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005208577.1

      UniProtKB/TrEMBL
      F6RA30, Q0VBX0
      Conserved Domains (1) summary
      pfam07303
      Location:95 → 196
      Occludin_ELL; Occludin homology domain

    2. XM_005208521.5 → XP_005208578.1  occludin/ELL domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005208578.1

      UniProtKB/TrEMBL
      F6RA30, Q0VBX0
      Conserved Domains (1) summary
      pfam07303
      Location:95 → 196
      Occludin_ELL; Occludin homology domain

    3. XM_059888383.1 → XP_059744366.1  occludin/ELL domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F6RA30, Q0VBX0

    4. XM_059888384.1 → XP_059744367.1  occludin/ELL domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      Q0VBX0

    5. XM_010806586.4 → XP_010804888.1  occludin/ELL domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_010804888.1

      UniProtKB/TrEMBL
      F6RA30, Q0VBX0
      Conserved Domains (1) summary
      pfam07303
      Location:95 → 196
      Occludin_ELL; Occludin homology domain
    Nucleotide Protein Strain
    Heading Accession and Version

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