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    PPRC1 PPARG related coactivator 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 513279, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PPRC1provided by VGNC
    Official Full Name
    PPARG related coactivator 1provided by VGNC
    Primary source
    VGNC:VGNC:33276
    See related
    BGD:BT15002; Ensembl:ENSBTAG00000007427
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PPRC1 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (22791947..22818924)

    Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL32-like Neighboring gene LIM domain binding 1 Neighboring gene small nucleolar RNA SNORD22 Neighboring gene ubiquitin-ribosomal protein eS31 fusion protein-like Neighboring gene nucleolar and coiled-body phosphoprotein 1 Neighboring gene vacuolar-sorting protein SNF8-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisome proliferator-activated receptor gamma coactivator-related protein 1
    Names
    peroxisome proliferator-activated receptor gamma, coactivator-related 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205755.3 → NP_001192684.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1

      See identical proteins and their annotated locations for NP_001192684.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000026
      UniProtKB/TrEMBL
      A0AAA9SKB2, F1MM51
      Related
      ENSBTAP00000032801.4, ENSBTAT00000032873.5
      Conserved Domains (1) summary
      cd12624
      Location:1543 → 1633
      RRM_PRC; RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22791947..22818924
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059881831.1 → XP_059737814.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X1

    2. XM_010819877.3 → XP_010818179.2  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X2

    3. XM_010819880.3 → XP_010818182.2  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X9

      UniProtKB/TrEMBL
      A0AAA9SKB2

    4. XM_010819878.3 → XP_010818180.2  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X3

    5. XM_059881833.1 → XP_059737816.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X11

      UniProtKB/TrEMBL
      A0AAA9SKB2

    6. XM_005225512.5 → XP_005225569.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X6

      See identical proteins and their annotated locations for XP_005225569.1

      UniProtKB/TrEMBL
      A0A3Q1MGD9, A0AAA9SKB2
      Related
      ENSBTAP00000073319.1, ENSBTAT00000078404.2
      Conserved Domains (1) summary
      cd12624
      Location:1502 → 1592
      RRM_PRC; RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins

    7. XM_005225509.5 → XP_005225566.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X4

      UniProtKB/TrEMBL
      A0AAA9SKB2
      Conserved Domains (1) summary
      cd12624
      Location:1540 → 1630
      RRM_PRC; RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins

    8. XM_024985582.2 → XP_024841350.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X5

      UniProtKB/TrEMBL
      A0AAA9SKB2
      Conserved Domains (3) summary
      cd12624
      Location:1539 → 1629
      RRM_PRC; RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins
      cl25397
      Location:528 → 636
      AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]
      cl26464
      Location:597 → 1193
      Atrophin-1; Atrophin-1 family

    9. XM_005225515.5 → XP_005225572.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X10

      UniProtKB/TrEMBL
      A0A3Q1MNQ3, A0AAA9SKB2
      Related
      ENSBTAP00000073558.1, ENSBTAT00000074968.2
      Conserved Domains (1) summary
      cd12624
      Location:1275 → 1365
      RRM_PRC; RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins

    10. XM_024985583.2 → XP_024841351.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X7

      UniProtKB/TrEMBL
      A0AAA9RZ46, A0AAA9SKB2
      Related
      ENSBTAP00000076587.1, ENSBTAT00000117204.1
      Conserved Domains (3) summary
      cd12624
      Location:1497 → 1587
      RRM_PRC; RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins
      cl25397
      Location:528 → 636
      AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]
      cl26464
      Location:597 → 1191
      Atrophin-1; Atrophin-1 family

    11. XM_059881832.1 → XP_059737815.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A3Q1LMX9, A0AAA9SKB2
      Related
      ENSBTAP00000058094.1, ENSBTAT00000073776.2
    Nucleotide Protein Strain
    Heading Accession and Version

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