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    PTP4A1 protein tyrosine phosphatase 4A1 [ Bos taurus (domestic cattle) ]

    Gene ID: 613326, updated on 30-Jan-2025

    Summary

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    Official Symbol
    PTP4A1provided by VGNC
    Official Full Name
    protein tyrosine phosphatase 4A1provided by VGNC
    Primary source
    VGNC:VGNC:33523
    See related
    BGD:BT22523; EnsemblRapid:ENSBTAG00070005486
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Annotation information
    Annotation category: suggests misassembly
    Orthologs
    human mouse all
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    Genomic context

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    See PTP4A1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (448438..458078)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene calsequestrin 1 (fast-twitch, skeletal muscle) pseudogene Neighboring gene transfer RNA serine (anticodon GGA) Neighboring gene PHD finger protein 3 Neighboring gene ras-related protein Rab-18-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC179416

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein tyrosine phosphatase type IVA 1
    Names
    protein tyrosine phosphatase type IVA, member 1
    NP_001193053.1
    NP_001341521.1
    XP_024852587.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206124.2 → NP_001193053.1  protein tyrosine phosphatase type IVA 1

      See identical proteins and their annotated locations for NP_001193053.1

      Status: VALIDATED

      Source sequence(s)
      DT852881, EE241880, EH145639, EH374978, EV695307
      UniProtKB/TrEMBL
      G5E526
      Conserved Domains (1) summary
      cd18537
      Location:1 → 167
      PTP-IVa1; protein tyrosine phosphatase type IVA 1

    2. NM_001354592.1 → NP_001341521.1  protein tyrosine phosphatase type IVA 1

      Status: VALIDATED

      Source sequence(s)
      DT852881, EE241880, EH138270, EH145639, EH374978, EV615004, EV695307, NKLS02000009
      UniProtKB/TrEMBL
      G5E526
      Related
      ENSBTAP00070007163.1, ENSBTAT00070012546.1
      Conserved Domains (1) summary
      cd18537
      Location:1 → 167
      PTP-IVa1; protein tyrosine phosphatase type IVA 1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      448438..458078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024996819.2 → XP_024852587.1  protein tyrosine phosphatase type IVA 1 isoform X1

      UniProtKB/TrEMBL
      G5E526
      Conserved Domains (1) summary
      cd18537
      Location:1 → 167
      PTP-IVa1; protein tyrosine phosphatase type IVA 1
    Nucleotide Protein Strain
    Heading Accession and Version

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