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    C2CD5 C2 calcium dependent domain containing 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 520387, updated on 27-Dec-2024

    Summary

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    Official Symbol
    C2CD5provided by VGNC
    Official Full Name
    C2 calcium dependent domain containing 5provided by VGNC
    Primary source
    VGNC:VGNC:26636
    See related
    Ensembl:ENSBTAG00000001673
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See C2CD5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (87691727..87783528)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene poly(A) polymerase alpha-like Neighboring gene ethanolamine kinase 1 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 Neighboring gene large ribosomal subunit protein uL16-like Neighboring gene uncharacterized LOC132345330

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA0528, MGC142988

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of D-glucose transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C2 domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102503.1 → NP_001095973.1  C2 domain-containing protein 5

      See identical proteins and their annotated locations for NP_001095973.1

      Status: PROVISIONAL

      Source sequence(s)
      BC148077
      UniProtKB/TrEMBL
      A0A3Q1MG72, A6QLT3, F1N6E7
      Related
      ENSBTAP00000002193.5, ENSBTAT00000002193.6
      Conserved Domains (1) summary
      cd08688
      Location:5 → 114
      C2_KIAA0528-like; C2 domain found in the Human KIAA0528 cDNA clone

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      87691727..87783528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059886435.1 → XP_059742418.1  C2 domain-containing protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MG72
      Related
      ENSBTAP00000073243.2, ENSBTAT00000068551.2

    2. XM_059886440.1 → XP_059742423.1  C2 domain-containing protein 5 isoform X8

      UniProtKB/TrEMBL
      A0A3Q1MG72

    3. XM_059886436.1 → XP_059742419.1  C2 domain-containing protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MG72
      Related
      ENSBTAP00000064510.2, ENSBTAT00000068809.2

    4. XM_059886441.1 → XP_059742424.1  C2 domain-containing protein 5 isoform X10

      UniProtKB/TrEMBL
      A0A3Q1MG72

    5. XM_059886445.1 → XP_059742428.1  C2 domain-containing protein 5 isoform X13

      UniProtKB/TrEMBL
      A0A3Q1MG72

    6. XM_059886433.1 → XP_059742416.1  C2 domain-containing protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MG72

    7. XM_059886438.1 → XP_059742421.1  C2 domain-containing protein 5 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1MG72

    8. XM_059886439.1 → XP_059742422.1  C2 domain-containing protein 5 isoform X6

      UniProtKB/TrEMBL
      A0A3Q1MG72

    9. XM_059886437.1 → XP_059742420.1  C2 domain-containing protein 5 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1MG72
      Related
      ENSBTAP00000056817.1, ENSBTAT00000072562.2

    10. XM_059886442.1 → XP_059742425.1  C2 domain-containing protein 5 isoform X11

      UniProtKB/TrEMBL
      A0A3Q1MG72

    11. XM_005206947.3 → XP_005207004.1  C2 domain-containing protein 5 isoform X7

      See identical proteins and their annotated locations for XP_005207004.1

      UniProtKB/TrEMBL
      A0A3Q1MG72, A0AAA9TZ43
      Related
      ENSBTAP00000102802.1, ENSBTAT00000134155.1
      Conserved Domains (1) summary
      cd08688
      Location:5 → 114
      C2_KIAA0528-like; C2 domain found in the Human KIAA0528 cDNA clone

    12. XM_005206948.3 → XP_005207005.1  C2 domain-containing protein 5 isoform X9

      See identical proteins and their annotated locations for XP_005207005.1

      UniProtKB/TrEMBL
      A0A3Q1M2V2, A0A3Q1MG72
      Related
      ENSBTAP00000062453.2, ENSBTAT00000082789.2
      Conserved Domains (1) summary
      cd08688
      Location:5 → 114
      C2_KIAA0528-like; C2 domain found in the Human KIAA0528 cDNA clone

    13. XM_059886444.1 → XP_059742427.1  C2 domain-containing protein 5 isoform X12

      UniProtKB/TrEMBL
      A0A3Q1MG72

    14. XM_059886446.1 → XP_059742429.1  C2 domain-containing protein 5 isoform X14

    RNA

    1. XR_009494401.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials