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    DPH3 diphthamide biosynthesis 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 511579, updated on 27-Dec-2024

    Summary

    Official Symbol
    DPH3provided by VGNC
    Official Full Name
    diphthamide biosynthesis 3provided by VGNC
    Primary source
    VGNC:VGNC:53537
    See related
    BGD:BT23861
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
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    Genomic context

    See DPH3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (153260334..153266521, complement)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112448134 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 15 Neighboring gene oxidoreductase NAD binding domain containing 1 Neighboring gene raftlin, lipid raft linker 1 Neighboring gene WAS/WASL-interacting protein family member 3

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    General protein information

    Preferred Names
    diphthamide biosynthesis protein 3
    Names
    CSL-type zinc finger-containing protein 2
    DPH3, KTI11 homolog
    zinc finger, CSL domain containing 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113299.2NP_001106770.1  diphthamide biosynthesis protein 3 isoform 1

      See identical proteins and their annotated locations for NP_001106770.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BC116080, DY113139, NKLS02000001
      UniProtKB/Swiss-Prot
      Q1LZC9
      Conserved Domains (1) summary
      pfam05207
      Location:660
      zf-CSL; CSL zinc finger
    2. NM_001303541.1NP_001290470.1  diphthamide biosynthesis protein 3 isoform 2

      See identical proteins and their annotated locations for NP_001290470.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
      Source sequence(s)
      BC116080, DY113139, EH137195, NKLS02000001
      UniProtKB/Swiss-Prot
      Q1LZC9
      Conserved Domains (1) summary
      pfam05207
      Location:645
      zf-CSL; CSL zinc finger

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      153260334..153266521 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024980398.2XP_024836166.2  diphthamide biosynthesis protein 3 isoform X2

    2. XM_024980433.2XP_024836201.1  diphthamide biosynthesis protein 3 isoform X3

      Conserved Domains (1) summary
      pfam05207
      Location:660
      zf-CSL; CSL zinc finger
    3. XM_059878777.1XP_059734760.1  diphthamide biosynthesis protein 3 isoform X1