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    LOC105378311 uncharacterized LOC105378311 [ Homo sapiens (human) ]

    Gene ID: 105378311, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC105378311
    Gene description
    uncharacterized LOC105378311
    See related
    Ensembl:ENSG00000234173
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC105378311 in Genome Data Viewer
    Location:
    10q21.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (54486230..54656051)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (55336339..55506124)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (56245990..56415811)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:55236154-55237043 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:55252302-55252832 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:55252833-55253362 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:55263887-55264720 Neighboring gene RNA, 5S ribosomal pseudogene 318 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:55357385-55358143 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:55358144-55358901 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:55358902-55359660 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:55359661-55360417 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:55379167-55379668 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:55504311-55504990 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:55620266-55620480 Neighboring gene protocadherin related 15 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:55926123-55926948 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:55926949-55927772 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:55931055-55931823 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:56154165-56154833 Neighboring gene NANOG hESC enhancer GRCh37_chr10:56170367-56170915 Neighboring gene RNA, U6 small nuclear 687, pseudogene Neighboring gene microRNA 548f-1 Neighboring gene neurofilament medium pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:56598350-56598522 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_13381 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3380 Neighboring gene small nucleolar RNA U13 Neighboring gene MT-RNR2 like 5 (pseudogene)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134503.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL356114, AL391356, BC040305
      Related
      ENST00000422842.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      54486230..54656051
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      55336339..55506124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)