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    LINC00967 long intergenic non-protein coding RNA 967 [ Homo sapiens (human) ]

    Gene ID: 100505659, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC00967provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 967provided by HGNC
    Primary source
    HGNC:HGNC:48725
    See related
    Ensembl:ENSG00000253138 AllianceGenome:HGNC:48725
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward placenta (RPKM 4.9) See more
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    Genomic context

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    See LINC00967 in Genome Data Viewer
    Location:
    8q13.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (66192114..66197319)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (66617796..66623001)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (67104349..67109554)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27476 Neighboring gene uncharacterized LOC112268029 Neighboring gene uncharacterized LOC124901954 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:67098699-67099309 Neighboring gene uncharacterized LOC102724687 Neighboring gene corticotropin releasing hormone Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:67140301-67141126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:67141127-67141950 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:67164075-67164914 Neighboring gene MPRA-validated peak7057 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27477 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27478 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27479 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27480 Neighboring gene RRS1 divergent transcript Neighboring gene ribosome biogenesis regulator 1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_039979.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090195, BX360434, BX389854, DB379123
      Related
      ENST00000729618.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      66192114..66197319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      66617796..66623001
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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