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    LINC01215 long intergenic non-protein coding RNA 1215 [ Homo sapiens (human) ]

    Gene ID: 101929623, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01215provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1215provided by HGNC
    Primary source
    HGNC:HGNC:49651
    See related
    Ensembl:ENSG00000271856 AllianceGenome:HGNC:49651
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in lymph node (RPKM 9.2), appendix (RPKM 4.6) and 4 other tissues See more
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    Genomic context

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    See LINC01215 in Genome Data Viewer
    Location:
    3q13.12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (108125064..108138610)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (110844853..110858390)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (107843911..107857457)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene CD47 molecule Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14591 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14592 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14593 Neighboring gene uncharacterized LOC105374031 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20208 Neighboring gene CRISPRi-validated cis-regulatory element chr3.3177 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:107843148-107843648 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20212 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20213 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20214 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:107849902-107851101 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14595 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20215 Neighboring gene intraflagellar transport 57 Neighboring gene MPRA-validated peak4760 silencer Neighboring gene MPRA-validated peak4761 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20216 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:107941185-107941478 Neighboring gene uncharacterized LOC124909405

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110028.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AA813865, AC012020, AW292872
      Related
      ENST00000607746.2

    2. NR_110030.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks and internal exon and uses an alternate 5' most exon compared to variant 1.
      Source sequence(s)
      AC012020, AW292872, CT001622

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      108125064..108138610
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      110844853..110858390
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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