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    FYB1 FYN binding protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 535347, updated on 27-Dec-2024

    Summary

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    Official Symbol
    FYB1provided by VGNC
    Official Full Name
    FYN binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:29160
    See related
    BGD:BT24471; Ensembl:ENSBTAG00000001492
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    FYB
    Orthologs
    human mouse all
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    Genomic context

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    See FYB1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 20 NC_037347.1 (35162100..35333319)

    Chromosome 20 - NC_037347.1Genomic Context describing neighboring genes Neighboring gene DAB adaptor protein 2 Neighboring gene complement C9 Neighboring gene RPTOR independent companion of MTOR complex 2 Neighboring gene oncostatin M receptor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037347.1 Chromosome 20 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in T cell receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FYN-binding protein 1
    Names
    FYN binding protein (FYB-120/130)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105414.1 → NP_001098884.1  FYN-binding protein 1

      See identical proteins and their annotated locations for NP_001098884.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134622
      UniProtKB/TrEMBL
      A0AAA9TTQ2, A7YWJ7
      Related
      ENSBTAP00000100458.1, ENSBTAT00000106008.1
      Conserved Domains (3) summary
      pfam14603
      Location:740 → 827
      hSH3; Helically-extended SH3 domain
      cl17036
      Location:508 → 601
      SH3; Src Homology 3 domain superfamily
      cl26464
      Location:58 → 433
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037347.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      35162100..35333319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059878760.1 → XP_059734743.1  FYN-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0AAA9TTQ2, A7YWJ7

    2. XM_059878759.1 → XP_059734742.1  FYN-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0AAA9TTQ2, A7YWJ7

    3. XM_005221607.5 → XP_005221664.2  FYN-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TTQ2
      Related
      ENSBTAP00000079119.1, ENSBTAT00000130627.1
      Conserved Domains (2) summary
      pfam14603
      Location:755 → 837
      hSH3; Helically-extended SH3 domain
      cl17036
      Location:518 → 611
      SH3; Src Homology 3 domain superfamily

    4. XM_059878758.1 → XP_059734741.1  FYN-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9TTQ2
      Related
      ENSBTAP00000001953.5, ENSBTAT00000001953.6
    Nucleotide Protein Strain
    Heading Accession and Version

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