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    SCARA5 scavenger receptor class A member 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 516087, updated on 29-Jan-2025

    Summary

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    Official Symbol
    SCARA5provided by VGNC
    Official Full Name
    scavenger receptor class A member 5provided by VGNC
    Primary source
    VGNC:VGNC:34323
    See related
    Ensembl:ENSBTAG00000019636
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SCARA5 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (10796560..10929735)

    Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene metallothionein-1A-like Neighboring gene elongator acetyltransferase complex subunit 3 Neighboring gene nuclear GTPase, germinal center associated Neighboring gene uncharacterized LOC112447908 Neighboring gene PDZ binding kinase Neighboring gene establishment of sister chromatid cohesion N-acetyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139192

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ferritin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in iron ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic cleft IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in terminal bouton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    scavenger receptor class A member 5
    Names
    scavenger receptor class A, member 5 (putative)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102499.1 → NP_001095969.1  scavenger receptor class A member 5

      See identical proteins and their annotated locations for NP_001095969.1

      Status: PROVISIONAL

      Source sequence(s)
      BC142199
      UniProtKB/Swiss-Prot
      A5PJQ2
      UniProtKB/TrEMBL
      A0A3Q1MSK3
      Related
      ENSBTAP00070021145.1, ENSBTAT00070036010.1
      Conserved Domains (4) summary
      pfam01391
      Location:322 → 381
      Collagen; Collagen triple helix repeat (20 copies)
      smart00202
      Location:393 → 492
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:398 → 493
      SRCR; Scavenger receptor cysteine-rich domain
      pfam08496
      Location:68 → 130
      Peptidase_S49_N; Peptidase family S49 N-terminal

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      10796560..10929735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5PJQ2.1 GenPept UniProtKB/Swiss-Prot:A5PJQ2

    Gene LinkOut

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