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    DOP1A DOP1 leucine zipper like protein A [ Bos taurus (domestic cattle) ]

    Gene ID: 541096, updated on 27-Dec-2024

    Summary

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    Official Symbol
    DOP1Aprovided by VGNC
    Official Full Name
    DOP1 leucine zipper like protein Aprovided by VGNC
    Primary source
    VGNC:VGNC:28172
    See related
    BGD:BT26887; Ensembl:ENSBTAG00000000676
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    DOPEY1
    Orthologs
    human mouse all
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    Genomic context

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    See DOP1A in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (22963822..23088928)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112448174 Neighboring gene ubiquitin protein ligase E3D Neighboring gene acyl-protein thioesterase 1-like Neighboring gene phosphoglucomutase 3 Neighboring gene RWD domain containing 2A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi to endosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein dopey-1; protein DOP1A
    Names
    dopey family member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22963822..23088928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059890074.1 → XP_059746057.1  protein DOP1A isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LX29
      Related
      ENSBTAP00000060048.2, ENSBTAT00000085183.2

    2. XM_059890075.1 → XP_059746058.1  protein DOP1A isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LX29, F1MPE2
      Related
      ENSBTAP00000053582.4, ENSBTAT00000061076.4

    3. XM_005210704.5 → XP_005210761.1  protein DOP1A isoform X2

      See identical proteins and their annotated locations for XP_005210761.1

      UniProtKB/TrEMBL
      A0A3Q1LX29, A0A3Q1MHL6
      Related
      ENSBTAP00000070730.2, ENSBTAT00000085572.2
      Conserved Domains (2) summary
      pfam04118
      Location:13 → 299
      Dopey_N; Dopey, N-terminal
      cl04407
      Location:2081 → 2317
      Dopey_N; Dopey, N-terminal

    4. XM_024996933.1 → XP_024852701.1  protein DOP1A isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LX29
      Conserved Domains (2) summary
      pfam04118
      Location:13 → 297
      Dopey_N; Dopey, N-terminal
      cl04407
      Location:2081 → 2317
      Dopey_N; Dopey, N-terminal
    Nucleotide Protein Strain
    Heading Accession and Version

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