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    SPA17 sperm autoantigenic protein 17 [ Bos taurus (domestic cattle) ]

    Gene ID: 616974, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SPA17provided by VGNC
    Official Full Name
    sperm autoantigenic protein 17provided by VGNC
    Primary source
    VGNC:VGNC:35160
    See related
    BGD:BT27797; Ensembl:ENSBTAG00000033464
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SPA17 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (28154529..28168621)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene transforming growth factor beta regulator 1 Neighboring gene sialic acid acetylesterase Neighboring gene uncharacterized LOC101903526 Neighboring gene neurogranin Neighboring gene V-set and immunoglobulin domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in binding of sperm to zona pellucida IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sperm fibrous sheath IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sperm principal piece IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sperm surface protein Sp17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076440.2 → NP_001069908.1  sperm surface protein Sp17

      See identical proteins and their annotated locations for NP_001069908.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103421
      UniProtKB/TrEMBL
      Q3SYS3
      Related
      ENSBTAP00000044793.3, ENSBTAT00000047600.4
      Conserved Domains (2) summary
      smart00015
      Location:110 → 131
      IQ; Calmodulin-binding motif
      cd12100
      Location:12 → 50
      DD_CABYR_SP17; Dimerization/Docking domain of the sperm fibrous sheath proteins, Calcium-Binding tYrosine-phosphorylation Regulated protein and Sperm Protein 17

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      28154529..28168621
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005226805.4 → XP_005226862.1  sperm surface protein Sp17 isoform X1

      Conserved Domains (2) summary
      smart00015
      Location:85 → 106
      IQ; Calmodulin-binding motif
      cd12100
      Location:12 → 50
      DD_CABYR_SP17; Dimerization/Docking domain of the sperm fibrous sheath proteins, Calcium-Binding tYrosine-phosphorylation Regulated protein and Sperm Protein 17
    Nucleotide Protein Strain
    Heading Accession and Version

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