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    PHF3 PHD finger protein 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 522928, updated on 29-Jan-2025

    Summary

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    Official Symbol
    PHF3provided by VGNC
    Official Full Name
    PHD finger protein 3provided by VGNC
    Primary source
    VGNC:VGNC:32825
    See related
    BGD:BT19532; Ensembl:ENSBTAG00000019139
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PHF3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (563414..669199)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon GGA) Neighboring gene protein tyrosine phosphatase 4A1 Neighboring gene ras-related protein Rab-18-like Neighboring gene E3 ubiquitin-protein ligase Itchy homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192571.3 → NP_001179500.3  PHD finger protein 3

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000009
      UniProtKB/TrEMBL
      G5E5M1
      Related
      ENSBTAP00070007172.1, ENSBTAT00070012560.1
      Conserved Domains (4) summary
      smart00510
      Location:921 → 1021
      TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
      cd15638
      Location:709 → 759
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07744
      Location:1192 → 1341
      SPOC; SPOC domain
      pfam08648
      Location:1905 → 2016
      DUF1777; Protein of unknown function (DUF1777)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      563414..669199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024996626.2 → XP_024852394.1  PHD finger protein 3 isoform X3

      Conserved Domains (3) summary
      smart00510
      Location:921 → 1021
      TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
      cd15638
      Location:709 → 759
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07744
      Location:1192 → 1325
      SPOC; SPOC domain

    2. XM_024996622.2 → XP_024852390.1  PHD finger protein 3 isoform X1

      UniProtKB/TrEMBL
      G5E5M1
      Related
      ENSBTAP00070007176.1, ENSBTAT00070012569.1
      Conserved Domains (4) summary
      smart00510
      Location:921 → 1021
      TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
      cd15638
      Location:709 → 759
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07744
      Location:1192 → 1341
      SPOC; SPOC domain
      pfam08648
      Location:1905 → 2016
      DUF1777; Protein of unknown function (DUF1777)

    3. XM_059889710.1 → XP_059745693.1  PHD finger protein 3 isoform X5

    4. XM_059889711.1 → XP_059745694.1  PHD finger protein 3 isoform X6

    5. XM_059889705.1 → XP_059745688.1  PHD finger protein 3 isoform X1

      UniProtKB/TrEMBL
      G5E5M1

    6. XM_059889706.1 → XP_059745689.1  PHD finger protein 3 isoform X1

      UniProtKB/TrEMBL
      G5E5M1

    7. XM_024996623.2 → XP_024852391.1  PHD finger protein 3 isoform X2

      UniProtKB/TrEMBL
      G5E5M1
      Conserved Domains (4) summary
      smart00510
      Location:833 → 933
      TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
      cd15638
      Location:621 → 671
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07744
      Location:1104 → 1253
      SPOC; SPOC domain
      cl25887
      Location:1829 → 1936
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    8. XM_059889707.1 → XP_059745690.1  PHD finger protein 3 isoform X2

      UniProtKB/TrEMBL
      G5E5M1

    9. XM_024996625.2 → XP_024852393.1  PHD finger protein 3 isoform X2

      UniProtKB/TrEMBL
      G5E5M1
      Conserved Domains (4) summary
      smart00510
      Location:833 → 933
      TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
      cd15638
      Location:621 → 671
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07744
      Location:1104 → 1253
      SPOC; SPOC domain
      cl25887
      Location:1829 → 1936
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    10. XM_059889708.1 → XP_059745691.1  PHD finger protein 3 isoform X2

      UniProtKB/TrEMBL
      G5E5M1

    11. XM_059889709.1 → XP_059745692.1  PHD finger protein 3 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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