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    POLR3A RNA polymerase III subunit A [ Bos taurus (domestic cattle) ]

    Gene ID: 540308, updated on 1-Jan-2025

    Summary

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    Official Symbol
    POLR3Aprovided by VGNC
    Official Full Name
    RNA polymerase III subunit Aprovided by VGNC
    Primary source
    VGNC:VGNC:33145
    See related
    BGD:BT17943; Ensembl:ENSBTAG00000013259
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See POLR3A in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (33674836..33723944, complement)

    Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene potassium calcium-activated channel subfamily M alpha 1 Neighboring gene microRNA mir-2285ba-1 Neighboring gene discs large MAGUK scaffold protein 5 Neighboring gene ribosomal protein S24 Neighboring gene uncharacterized LOC132344144

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137470

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase III activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase III subunit RPC1
    Names
    DNA-directed RNA polymerase III subunit A
    RNA polymerase III subunit C1
    polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
    NP_001077219.1
    XP_005226506.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083750.1 → NP_001077219.1  DNA-directed RNA polymerase III subunit RPC1

      See identical proteins and their annotated locations for NP_001077219.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134422
      UniProtKB/Swiss-Prot
      A4IF62
      UniProtKB/TrEMBL
      A0AAA9SAU7
      Related
      ENSBTAP00000017638.5, ENSBTAT00000017638.7
      Conserved Domains (4) summary
      cd02736
      Location:1021 → 1360
      RNAP_III_Rpc1_C; Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain
      PRK08566
      Location:7 → 930
      PRK08566; DNA-directed RNA polymerase subunit A'; Validated
      cd02583
      Location:24 → 891
      RNAP_III_RPC1_N; Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain
      pfam04998
      Location:841 → 1317
      RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      33674836..33723944 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005226449.5 → XP_005226506.1  DNA-directed RNA polymerase III subunit RPC1 isoform X1

      See identical proteins and their annotated locations for XP_005226506.1

      UniProtKB/TrEMBL
      A0AAA9SAU7, A0AAA9STD7
      Related
      ENSBTAP00000086329.1, ENSBTAT00000122265.1
      Conserved Domains (4) summary
      cd02736
      Location:1033 → 1372
      RNAP_III_Rpc1_C; Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain
      PRK08566
      Location:7 → 930
      PRK08566; DNA-directed RNA polymerase subunit A'; Validated
      cd02583
      Location:24 → 891
      RNAP_III_RPC1_N; Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain
      pfam04998
      Location:841 → 1329
      RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4IF62.1 GenPept UniProtKB/Swiss-Prot:A4IF62

    Gene LinkOut

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