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    BORCS5 BLOC-1 related complex subunit 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 614947, updated on 27-Dec-2024

    Summary

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    Official Symbol
    BORCS5provided by VGNC
    Official Full Name
    BLOC-1 related complex subunit 5provided by VGNC
    Primary source
    VGNC:VGNC:26542
    See related
    BGD:BT13928; Ensembl:ENSBTAG00000008989
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    LOH12CR1
    Orthologs
    human mouse all
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    Genomic context

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    See BORCS5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (97343094..97440512, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein like 2 Neighboring gene dual specificity phosphatase 16 Neighboring gene translation machinery-associated protein 7-like Neighboring gene MANSC domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC143364

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lysosome localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in organelle transport along microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of anterograde synaptic vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BORC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasmic side of lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BLOC-1-related complex subunit 5
    Names
    loss of heterozygosity 12 chromosomal region 1 protein homolog
    loss of heterozygosity, 12, chromosomal region 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076355.1 → NP_001069823.1  BLOC-1-related complex subunit 5

      See identical proteins and their annotated locations for NP_001069823.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123638
      UniProtKB/Swiss-Prot
      Q08DP2
      Related
      ENSBTAP00000011832.4, ENSBTAT00000011832.6
      Conserved Domains (1) summary
      pfam10158
      Location:61 → 191
      LOH1CR12; tumor suppressor protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      97343094..97440512 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010805497.3 → XP_010803799.1  BLOC-1-related complex subunit 5 isoform X2

      See identical proteins and their annotated locations for XP_010803799.1

      Conserved Domains (1) summary
      pfam10158
      Location:42 → 172
      LOH1CR12; tumor suppressor protein

    2. XM_005207027.5 → XP_005207084.1  BLOC-1-related complex subunit 5 isoform X4

      Conserved Domains (1) summary
      pfam10158
      Location:61 → 121
      LOH1CR12; Tumour suppressor protein

    3. XM_024992174.2 → XP_024847942.1  BLOC-1-related complex subunit 5 isoform X3

      Conserved Domains (1) summary
      pfam10158
      Location:31 → 161
      LOH1CR12; tumor suppressor protein

    4. XM_059886721.1 → XP_059742704.1  BLOC-1-related complex subunit 5 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08DP2.1 GenPept UniProtKB/Swiss-Prot:Q08DP2

    Gene LinkOut

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