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    AP5Z1 adaptor related protein complex 5 subunit zeta 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 512522, updated on 27-Dec-2024

    Summary

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    Official Symbol
    AP5Z1provided by VGNC
    Official Full Name
    adaptor related protein complex 5 subunit zeta 1provided by VGNC
    Primary source
    VGNC:VGNC:25998
    See related
    BGD:BT13039; Ensembl:ENSBTAG00000012197
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See AP5Z1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (39192109..39207808, complement)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene Rap associating with DIL domain Neighboring gene monocyte to macrophage differentiation associated 2 Neighboring gene poly(A) polymerase beta Neighboring gene forkhead box K1 Neighboring gene microRNA mir-2890

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA0415

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of AP-5 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-5 complex subunit zeta-1
    Names
    adaptor related protein complex 5 zeta 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205358.1 → NP_001192287.1  AP-5 complex subunit zeta-1

      Status: VALIDATED

      Source sequence(s)
      BC123866, BI542142, EE374624
      UniProtKB/TrEMBL
      A7YVI7
      Conserved Domains (1) summary
      pfam14764
      Location:320 → 437
      SPG48; AP-5 complex subunit, vesicle trafficking

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      39192109..39207808 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005225084.5 → XP_005225141.3  AP-5 complex subunit zeta-1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SI73, A0AAA9TCS9
      Related
      ENSBTAP00000085935.1, ENSBTAT00000093368.1

    2. XM_005225083.5 → XP_005225140.3  AP-5 complex subunit zeta-1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LXJ6, A0AAA9TCS9
      Related
      ENSBTAP00000065503.2, ENSBTAT00000067377.2

    3. XM_010819524.4 → XP_010817826.1  AP-5 complex subunit zeta-1 isoform X4

      UniProtKB/TrEMBL
      A7YVI7, F1MZR9
      Related
      ENSBTAP00000016176.5, ENSBTAT00000016176.6
      Conserved Domains (1) summary
      pfam14764
      Location:325 → 442
      SPG48; AP-5 complex subunit, vesicle trafficking

    4. XM_024984803.2 → XP_024840571.1  AP-5 complex subunit zeta-1 isoform X3

      UniProtKB/TrEMBL
      A7YVI7
      Conserved Domains (2) summary
      pfam05703
      Location:665 → 755
      Auxin_canalis; Auxin canalisation
      pfam14764
      Location:333 → 450
      SPG48; AP-5 complex subunit, vesicle trafficking

    5. XM_059881272.1 → XP_059737255.1  AP-5 complex subunit zeta-1 isoform X5

      UniProtKB/TrEMBL
      A7YVI7
    Nucleotide Protein Strain
    Heading Accession and Version

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