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    AMD1 adenosylmethionine decarboxylase 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 280997, updated on 27-Dec-2024

    Summary

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    Official Symbol
    AMD1provided by VGNC
    Official Full Name
    adenosylmethionine decarboxylase 1provided by VGNC
    Primary source
    VGNC:VGNC:25859
    See related
    BGD:BT12022
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See AMD1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (39424554..39445862, complement)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene ribosome production factor 2 homolog Neighboring gene general transcription factor IIIC subunit 6 Neighboring gene cyclin dependent kinase 19 Neighboring gene uncharacterized LOC112448039 Neighboring gene uncharacterized LOC132346098

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Isolation of a cDNA clone encoding S-adenosylmethionine decarboxylase. Expression of the gene in mitogen-activated lymphocytes. Mach M, et al. J Biol Chem, 1986 Sep 5. PMID 3017942
    2. Cell-specific translational regulation of S-adenosylmethionine decarboxylase mRNA. Dependence on translation and coding capacity of the cis-acting upstream open reading frame. Hill JR, et al. J Biol Chem, 1993 Jan 5. PMID 8416975
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables adenosylmethionine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables putrescine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spermidine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    S-adenosylmethionine decarboxylase proenzyme
    Names
    S-adenosylmethionine decarboxylase 1
    SAMDC
    adoMetDC
    NP_776415.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173990.2 → NP_776415.1  S-adenosylmethionine decarboxylase proenzyme

      See identical proteins and their annotated locations for NP_776415.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123795
      UniProtKB/Swiss-Prot
      P50243, Q08DE3
      UniProtKB/TrEMBL
      A0A3Q1LTI7
      Conserved Domains (1) summary
      pfam01536
      Location:4 → 325
      SAM_decarbox; Adenosylmethionine decarboxylase

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      39424554..39445862 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P50243.1 GenPept UniProtKB/Swiss-Prot:P50243

    Gene LinkOut

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