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    DDX47 DEAD-box helicase 47 [ Bos taurus (domestic cattle) ]

    Gene ID: 534721, updated on 27-Dec-2024

    Summary

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    Official Symbol
    DDX47provided by VGNC
    Official Full Name
    DEAD-box helicase 47provided by VGNC
    Primary source
    VGNC:VGNC:27970
    See related
    BGD:BT10893; Ensembl:ENSBTAG00000019608
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See DDX47 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (97017445..97030497, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor class C group 5 member D Neighboring gene G protein-coupled receptor class C group 5 member A Neighboring gene apolipoprotein L domain containing 1 Neighboring gene cyclin dependent kinase inhibitor 1B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions. Nishihara H, et al. Proc Natl Acad Sci U S A, 2006 Jun 27. PMID 16785431, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137784

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ATP-dependent RNA helicase DDX47
    Names
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
    DEAD box protein 47
    NP_001039850.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046385.1 → NP_001039850.1  probable ATP-dependent RNA helicase DDX47

      See identical proteins and their annotated locations for NP_001039850.1

      Status: PROVISIONAL

      Source sequence(s)
      BC113207
      UniProtKB/Swiss-Prot
      Q29S22
      UniProtKB/TrEMBL
      A0A3Q1LSA3
      Related
      ENSBTAP00000003058.5, ENSBTAT00000003058.6
      Conserved Domains (3) summary
      PRK11192
      Location:26 → 448
      PRK11192; ATP-dependent RNA helicase SrmB; Provisional
      cd00079
      Location:239 → 368
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:28 → 229
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      97017445..97030497 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q29S22.1 GenPept UniProtKB/Swiss-Prot:Q29S22

    Gene LinkOut

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