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    NTM neurotrimin [ Bos taurus (domestic cattle) ]

    Gene ID: 534414, updated on 27-Dec-2024

    Summary

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    Official Symbol
    NTMprovided by VGNC
    Official Full Name
    neurotriminprovided by VGNC
    Primary source
    VGNC:VGNC:32302
    See related
    Ensembl:ENSBTAG00000010032
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    AXL; HNT
    Orthologs
    human mouse all
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    Genomic context

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    See NTM in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (34575763..35540401, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene opioid binding protein/cell adhesion molecule like Neighboring gene histone cluster 1, H4d Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene uncharacterized LOC112444975 Neighboring gene uncharacterized LOC132344232 Neighboring gene uncharacterized LOC112444947

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139543

    General protein information

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    Preferred Names
    neurotrimin
    Names
    NTM receptor tyrosine kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017949.2 → NP_001017949.1  neurotrimin precursor

      Status: PROVISIONAL

      Source sequence(s)
      BC118192
      UniProtKB/Swiss-Prot
      Q17QT6, Q58DA5
      UniProtKB/TrEMBL
      A0A3S5HJU8, A0A3S5HJV5
      Conserved Domains (3) summary
      pfam13927
      Location:136 → 205
      Ig_3; Immunoglobulin domain
      cd00096
      Location:223 → 229
      Ig; putative Ig strand A [structural motif]
      cl11960
      Location:223 → 310
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      34575763..35540401 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024987209.2 → XP_024842977.1  neurotrimin isoform X4

      UniProtKB/TrEMBL
      A0A3S5HJU8, A0AAA9SQA4
      Related
      ENSBTAP00000085116.1, ENSBTAT00000123779.1
      Conserved Domains (3) summary
      smart00409
      Location:233 → 310
      IG; Immunoglobulin
      pfam13927
      Location:136 → 205
      Ig_3; Immunoglobulin domain
      cl11960
      Location:44 → 132
      Ig; Immunoglobulin domain

    2. XM_005226852.5 → XP_005226909.1  neurotrimin isoform X1

      UniProtKB/TrEMBL
      A0A3S5HJU8, A0AAA9T8W3
      Related
      ENSBTAP00000095136.1, ENSBTAT00000115096.1
      Conserved Domains (3) summary
      pfam13927
      Location:222 → 299
      Ig_3; Immunoglobulin domain
      cd00096
      Location:223 → 229
      Ig; putative Ig strand A [structural motif]
      cl11960
      Location:44 → 132
      Ig; Immunoglobulin domain

    3. XM_024987210.2 → XP_024842978.1  neurotrimin isoform X5

      UniProtKB/TrEMBL
      A0A3Q1LU29, A0A3S5HJU8
      Related
      ENSBTAP00000060624.2, ENSBTAT00000074067.2
      Conserved Domains (3) summary
      smart00409
      Location:233 → 310
      IG; Immunoglobulin
      pfam13927
      Location:136 → 205
      Ig_3; Immunoglobulin domain
      cl11960
      Location:44 → 132
      Ig; Immunoglobulin domain

    4. XM_059882969.1 → XP_059738952.1  neurotrimin isoform X2

      UniProtKB/TrEMBL
      A0AAF6YUQ0
      Related
      ENSBTAP00000013234.6, ENSBTAT00000013234.7

    5. XM_005226856.5 → XP_005226913.1  neurotrimin isoform X7

      UniProtKB/TrEMBL
      A0AAF6YUQ0
      Conserved Domains (3) summary
      pfam13927
      Location:181 → 258
      Ig_3; Immunoglobulin domain
      cd00096
      Location:182 → 188
      Ig; putative Ig strand A [structural motif]
      cl11960
      Location:3 → 91
      Ig; Immunoglobulin domain

    6. XM_059882970.1 → XP_059738953.1  neurotrimin isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MDM1, A0A3S5HJU8
      Related
      ENSBTAP00000069033.2, ENSBTAT00000076299.2

    7. XM_010820973.4 → XP_010819275.2  neurotrimin isoform X6

      UniProtKB/TrEMBL
      A0A3S5HJU8
      Conserved Domains (3) summary
      smart00409
      Location:233 → 310
      IG; Immunoglobulin
      pfam13927
      Location:136 → 205
      Ig_3; Immunoglobulin domain
      cl11960
      Location:44 → 132
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q58DA5.1 GenPept UniProtKB/Swiss-Prot:Q58DA5

    Gene LinkOut

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