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    FAM149B1 family with sequence similarity 149 member B1 [ Bos taurus (domestic cattle) ]

    Gene ID: 533952, updated on 27-Dec-2024

    Summary

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    Official Symbol
    FAM149B1provided by VGNC
    Official Full Name
    family with sequence similarity 149 member B1provided by VGNC
    Primary source
    VGNC:VGNC:28733
    See related
    BGD:BT27737; Ensembl:ENSBTAG00000019130
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See FAM149B1 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (29237002..29287049)

    Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 13 Neighboring gene tRNA (guanine(10)-N2)-methyltransferase homolog Neighboring gene ecdysoneless cell cycle regulator Neighboring gene DnaJ heat shock protein family (Hsp40) member C9 Neighboring gene mitochondrial ribosomal protein S16 Neighboring gene cilia and flagella associated protein 70

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC152225

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    primary cilium assembly protein FAM149B1
    Names
    Protein FAM149B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077994.2 → NP_001071462.1  primary cilium assembly protein FAM149B1

      See identical proteins and their annotated locations for NP_001071462.1

      Status: PROVISIONAL

      Source sequence(s)
      BC126656
      UniProtKB/Swiss-Prot
      A0JNF3
      UniProtKB/TrEMBL
      A0AAA9SA49
      Related
      ENSBTAP00000079042.1, ENSBTAT00000126087.1
      Conserved Domains (1) summary
      pfam12516
      Location:22 → 86
      DUF3719; Protein of unknown function (DUF3719)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      29237002..29287049
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005226424.5 → XP_005226481.1  primary cilium assembly protein FAM149B1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TIN1
      Related
      ENSBTAP00000082635.1, ENSBTAT00000129724.1
      Conserved Domains (1) summary
      pfam12516
      Location:115 → 179
      DUF3719; Protein of unknown function (DUF3719)

    2. XM_005226425.5 → XP_005226482.1  primary cilium assembly protein FAM149B1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9TIN1
      Conserved Domains (1) summary
      pfam12516
      Location:115 → 179
      DUF3719; Protein of unknown function (DUF3719)

    3. XM_059882548.1 → XP_059738531.1  primary cilium assembly protein FAM149B1 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0JNF3.1 GenPept UniProtKB/Swiss-Prot:A0JNF3

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