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    PRRT1 proline rich transmembrane protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 617717, updated on 29-Jan-2025

    Summary

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    Official Symbol
    PRRT1provided by VGNC
    Official Full Name
    proline rich transmembrane protein 1provided by VGNC
    Primary source
    VGNC:VGNC:50003
    See related
    Ensembl:ENSBTAG00000038904
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    NG5
    Orthologs
    human mouse all
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    Genomic context

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    See PRRT1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (27232721..27238650)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 5 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 1 Neighboring gene EGF like domain multiple 8 Neighboring gene palmitoyl-protein thioesterase 2 Neighboring gene uncharacterized LOC132343671 Neighboring gene FKBP prolyl isomerase like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. YAC/BAC contig spanning the MHC class III region of cattle. Gelhaus A, et al. Cytogenet Genome Res, 2006. PMID 16974083
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC143111

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proline-rich transmembrane protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076947.1 → NP_001070415.1  proline-rich transmembrane protein 1

      See identical proteins and their annotated locations for NP_001070415.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123833
      UniProtKB/TrEMBL
      A0AAA9SI35, F1MPH7, Q08DC1
      Related
      ENSBTAP00070017334.1, ENSBTAT00070028386.1
      Conserved Domains (1) summary
      pfam04505
      Location:218 → 284
      CD225; Interferon-induced transmembrane protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      27232721..27238650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059880440.1 → XP_059736423.1  proline-rich transmembrane protein 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SI35, F1MPH7, Q08DC1

    2. XM_059880439.1 → XP_059736422.1  proline-rich transmembrane protein 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SI35, F1MPH7, Q08DC1

    3. XM_024983740.2 → XP_024839508.1  proline-rich transmembrane protein 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SI35, F1MPH7, Q08DC1
      Conserved Domains (1) summary
      pfam04505
      Location:218 → 284
      CD225; Interferon-induced transmembrane protein
    Nucleotide Protein Strain
    Heading Accession and Version

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