STAU1 staufen double-stranded RNA binding protein 1 [Bos taurus (domestic cattle)] - Gene

Summary

Official Symbol: STAU1provided by VGNC
Official Full Name: staufen double-stranded RNA binding protein 1provided by VGNC
Primary source: VGNC:VGNC:35375
See related: BGD:BT20319; EnsemblRapid:ENSBTAG00070017984
Gene type: protein coding
RefSeq status: MODEL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_12	current	ARS-UCD2.0 (GCF_002263795.3)	13	NC_037340.1 (77235901..77297641, complement)

Chromosome 13 - NC_037340.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Dominette sequence data
BioProject: PRJNA294306
Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

STAU1 & STAU2 & ELAVL1 mRNAs & proteins were detected throughout cow preimplantation development from the germinal vesicle (GV) oocyte to the blastocyst stage; ELAVL2 mRNAs were detectable from the GV to the morula stage; ELAVL2 protein was in all stages
Title: Bovine oocytes and early embryos express Staufen and ELAVL RNA-binding proteins.

Submit: New GeneRIF Correction

General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables double-stranded RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables mRNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in anterograde dendritic transport of messenger ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info	PubMed
involved_in germ cell development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in intracellular mRNA localization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein localization to synapse	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasmic stress granule	IEA Inferred from Electronic Annotation more info	PubMed
located_in neuron projection	IEA Inferred from Electronic Annotation more info	PubMed
located_in neuronal cell body	IEA Inferred from Electronic Annotation more info	PubMed
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: double-stranded RNA-binding protein Staufen homolog 1

Names: staufen, RNA binding protein, homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

Range

77235901..77297641 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_025001323.2 → XP_024857091.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X9

UniProtKB/TrEMBL

A6QNY4

Conserved Domains (2) summary

smart00358
Location:135 → 201

DSRM; Double-stranded RNA binding motif

pfam16482
Location:296 → 405

Staufen_C; Staufen C-terminal domain
XM_025001325.2 → XP_024857093.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X8

UniProtKB/TrEMBL

A6QNY4

Conserved Domains (2) summary

smart00358
Location:206 → 272

DSRM; Double-stranded RNA binding motif

pfam16482
Location:367 → 476

Staufen_C; Staufen C-terminal domain
XM_025001324.2 → XP_024857092.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X7

UniProtKB/TrEMBL

A0AAA9TSK7, A6QNY4

Related

ENSBTAP00070024123.1, ENSBTAT00070040608.1

Conserved Domains (2) summary

smart00358
Location:212 → 278

DSRM; Double-stranded RNA binding motif

pfam16482
Location:373 → 482

Staufen_C; Staufen C-terminal domain
XM_025001317.2 → XP_024857085.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X7

UniProtKB/TrEMBL

A0AAA9TSK7, A6QNY4

Conserved Domains (2) summary

smart00358
Location:212 → 278

DSRM; Double-stranded RNA binding motif

pfam16482
Location:373 → 482

Staufen_C; Staufen C-terminal domain
XM_059893075.1 → XP_059749058.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
XM_025001314.2 → XP_024857082.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X7

UniProtKB/TrEMBL

A0AAA9TSK7, A6QNY4

Conserved Domains (2) summary

smart00358
Location:212 → 278

DSRM; Double-stranded RNA binding motif

pfam16482
Location:373 → 482

Staufen_C; Staufen C-terminal domain
XM_059893078.1 → XP_059749061.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X7

UniProtKB/TrEMBL

A0AAA9TSK7, A6QNY4
XM_025001319.2 → XP_024857087.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X8

UniProtKB/TrEMBL

A6QNY4

Conserved Domains (2) summary

smart00358
Location:206 → 272

DSRM; Double-stranded RNA binding motif

pfam16482
Location:367 → 476

Staufen_C; Staufen C-terminal domain
XM_059893076.1 → XP_059749059.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X3

UniProtKB/TrEMBL

A6QNY4
XM_025001313.2 → XP_024857081.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X6

UniProtKB/TrEMBL

A6QNY4, F1MH34

Related

ENSBTAP00070024115.1, ENSBTAT00070040596.1

Conserved Domains (2) summary

smart00358
Location:287 → 353

DSRM; Double-stranded RNA binding motif

pfam16482
Location:448 → 557

Staufen_C; Staufen C-terminal domain
XM_025001311.2 → XP_024857079.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X5

UniProtKB/TrEMBL

A6QNY4

Conserved Domains (2) summary

smart00358
Location:293 → 359

DSRM; Double-stranded RNA binding motif

pfam16482
Location:454 → 563

Staufen_C; Staufen C-terminal domain
XM_025001308.2 → XP_024857076.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X4

Conserved Domains (2) summary

smart00358
Location:310 → 376

DSRM; Double-stranded RNA binding motif

pfam16482
Location:471 → 580

Staufen_C; Staufen C-terminal domain
XM_025001307.2 → XP_024857075.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X2

UniProtKB/TrEMBL

A0AAA9S8L6

Related

ENSBTAP00070024128.1, ENSBTAT00070040617.1

Conserved Domains (2) summary

smart00358
Location:381 → 447

DSRM; Double-stranded RNA binding motif

pfam16482
Location:542 → 651

Staufen_C; Staufen C-terminal domain
XM_025001305.2 → XP_024857073.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1

Conserved Domains (2) summary

smart00358
Location:387 → 453

DSRM; Double-stranded RNA binding motif

pfam16482
Location:548 → 657

Staufen_C; Staufen C-terminal domain
XM_025001315.2 → XP_024857083.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X7

UniProtKB/TrEMBL

A0AAA9TSK7, A6QNY4

Conserved Domains (2) summary

smart00358
Location:212 → 278

DSRM; Double-stranded RNA binding motif

pfam16482
Location:373 → 482

Staufen_C; Staufen C-terminal domain
XM_025001306.2 → XP_024857074.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1

Conserved Domains (2) summary

smart00358
Location:387 → 453

DSRM; Double-stranded RNA binding motif

pfam16482
Location:548 → 657

Staufen_C; Staufen C-terminal domain
XM_059893077.1 → XP_059749060.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X7

UniProtKB/TrEMBL

A0AAA9TSK7, A6QNY4
XM_059893074.1 → XP_059749057.1 double-stranded RNA-binding protein Staufen homolog 1 isoform X1